Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05952 ATGGCTTCTGCAAGTGGAAATGGCACTGGCACCGGCACAGGCTCTGGCTCTGGATCTCCTTGTGGAGCATGCAAGTTCCTTCGACGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGTTCTGAACAAGGACCTGCTAGATTTGCAGCCATCCATAAGGTGTTTGGTGCTAGCAACGTTTCCAAGTTGCTTTTGCATATTCCAGCTCATGATCGTTGTGAGGCTGTGGTCACAATTGCTTATGAAGCCCAAGCTCGTATCAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTTGCCTTACAACAACAGGTAGTAGCATGCTTGCAGGCACAACTGATGCAAGTGAAGGCACAGCTGGCTCAGAACATGGAGTCAAGGAACTTGGAGAATCAGCAGTGGTCAGGGAATGTTGCTGGACAACCACCATTCAATAATCCACTTTGTCCCACTAATTACATGAACCCTATATCTCCTCAGAGCTCACTTGATTCAATTGATTATAGCAGCATCCATGATGGACTCAACATGCAAGATATACAGAGCAGAGAGGATTTCTCATTCCAAGCTTGTTCTAAGAAAAGATCATATAATAATAATGATGATTTGGGTGAGCTGCAAGAACTGGCACTCAGGATGATGAGGAACTATAACTAG 663 0.4495 MASASGNGTGTGTGSGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVVACLQAQLMQVKAQLAQNMESRNLENQQWSGNVAGQPPFNNPLCPTNYMNPISPQSSLDSIDYSSIHDGLNMQDIQSREDFSFQACSKKRSYNNNDDLGELQELALRMMRNYN. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05952 220 MobiDBLite consensus disorder prediction 1 18 - -
Seca7g05952 220 ProSiteProfiles LOB domain profile. 19 122 IPR004883 -
Seca7g05952 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 180 - -
Seca7g05952 220 MobiDBLite consensus disorder prediction 1 20 - -
Seca7g05952 220 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05952 Seca-Chr7 159397904 159399522 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05952 9 218 AS2 family AT2G42430 53.785 6.37e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g05952 LOB 4.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05952 K13944 - gmx:100801508 332.798