Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05950 ATGACTGGTTCTGGTTCTGGTTCTGGCTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTCTTAGTGACCGTTGTGAAGCTGCTGTCACAATCTCATATGAAGCTCAAGCTAGACTTCAAGATCCCATTTATGGCTGTGTTTCCCATATTTTTGCTCTTCAACAACAGGTGGTAAATTTACAAGCACAGCTAGCTTATCTCAAAGAACAAGCAGCTCAGACTTGTTTCAACACCTCTACCAATGAAAACCCTAATGAAAATTACTTTGAAAAATCTACTACTTTCACCCAAGATCTTCAGAGTTGGTTCCAGGGGGAAAATTCCAACCTGGGGCCAGAGTTTCTTCCTAACTTGTCTAATAATAATTCCTCAGCAACACAATATTATGGGAACAATAATACTCTCATGGATCTGAATCCTGTTGGGAATTATGGAAATTCAGGAGGAGTCATGGAAGAAAGCAGCTCATTTTCTAGCTTTGATGAGAGTTCTAATTCCATGTCCTATGACATGCAAACAAACAGGAGAACATGGGGATTTGATGAAGTGGAAGACCTACATTCAGTGGCTTTTGGATACAGTTGA 714 0.416 MTGSGSGSGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPLSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQTCFNTSTNENPNENYFEKSTTFTQDLQSWFQGENSNLGPEFLPNLSNNNSSATQYYGNNNTLMDLNPVGNYGNSGGVMEESSSFSSFDESSNSMSYDMQTNRRTWGFDEVEDLHSVAFGYS. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05950 237 Coils Coil 93 113 - -
Seca7g05950 237 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Seca7g05950 237 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Seca7g05950 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05950 Seca-Chr7 159377330 159378293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05950 13 236 AS2 family AT3G58190 51.724 4.08e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g05950 LOB 9.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05950 K13945 - gmx:100776678 364.385