Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05940 ATGAGAAAATCCTCGAAGGCATCTTCTTCCTCTCCATCATCCAAATCCGAGAAGAAGCCCCATCTTCGAAGCTCCAAAGACCAATGGCCAGAGACCCCAGATAAGCTACCACAGCGCTCGCGCAACCGCGGCGTCGCGCTCTCCGTTGCGGAGATTAGGAAAGTCGCCGAGGGTTTGCAGGATCGGAAGCAACGCCGTGAAACGACGTCGTCGCAAGCCAAAACGGCAAGGAGGCAGATCGCATTGCCTTCCCCATCTAAACCCAAGACTGTTACTGATGAACCCTCCAAGCTTCTGGAAAAGTATGAAATTCTGGGCGAGTTCTTCGACAGCTTGGATAGTTCGATTCGATTATTGCGTTTGAAAGGGTCGATGCCTTCTTTCACAAATATCAGTCCCAGCATTGAACGTTTAACTGATAGGAGGTTTACACATGGTCATCTGGCCCAGTTGAAATTCATCTTACCTGAGGCAATTGAAATTAAGAAGTTACTTGTGTTTGATGAACGGACAAGTTGTATGAAGCCAGATCTTCATGTTACTATAAACCCTGATGCAGTAGAGTCTGATGCTAAGTTGCTCCCTGAACGTCGGACTGGGTCGCTGAGGAAGTTATTTCGCACACGCCTTAGAGATTTTTGTAAATCTCATTCTGAGGTGATTCCCAAGAATTCCAACTTACATATATGCTTAGGTGATGAAATTCCAGAGGAAATGCTGCCTGAGCCATTCAATCGCCCAACTCCCTCATCATTACCTAAGGAGGCATTATCAGATGCATCTGTGACACATCCTCCAGCACCTTTATCAGCATGCCTGCAGAATAATGACATTGCAGATAATAAAGATTCGGCTAACATAGAAAAGAACTTGTCAGATAATACAGATTCTGCTAACCAGCAACTAGCAGTAGCCTATCATATGTCCAAAGCTTTTACAAGGCGGTTTTCTCAGAAATCTAAGGAAAATGGAGCAGATAATGCACAGCAAAATTGTCCATCAGATTCTTTCCAACCATTGACTTTTCCAGTTTCAGAGTCAAGCCTGAAGGAAAATTGCTCTTATGAGAGCACTAAATCAAATCCCAAAACATGCCCATCTGAGATAGCTTCAGAAGCAGCCAGTAGTGGGTTGTGCCCGACAGTCTGTGCTTCTTCAAGTTGCTTCACATCATCCAGTGCTCCACCTGCTACTCCAAGCAAAACCATTGAGTATACAGAAAACAAAGATGGGTCTCTCAAAAGCATCAACGCCACATCAACTCCGGCTAAACTTTTGTGTACTCCATCCAGACTGATGTCTGCCACTCCTGCATTGCCTGCACCTAAAAGAGCTTACATGAGTCCTGATGACAACTCTACCAGTTCACTGAACAAGTTGGTTAGACGACCACCTCGAACAAGATCATTGAAATTTGACTCTCCAGTGAAAAATGAAGATGTTGCTGGTAGCTTGTCAATTGATGACGATATTTTTGATATCCTGCCAGAGAATCTCCTCCAATCGATTATGGAAAAAGAAAGAATAGCAATGGAGGAAAGTGATCCCGCTATCTCACAAGCAAAGAGACGTCAAAAAATTATCGCCAGCCTCCCTAAGCTCTTTAACATGATTAACCTGTTGTTTCATTCAAAAAACCGTTCTGTTATCACGAAAGAGGAGCTTATAAGCAAGATAATCTCAAGCAATTGTGATATTGTTGACAGAAGTGAAGTTGAAGACCAGCTGCATTTGTTGCTAGAACTAGTACCGGAGTGGATTTCTGAGAAGTTGGCCTCTAGTGGGGATTTCCTATTCTGCATAAATAAAATGTTGAACCCTGAAACCGTACGAGCATCACTTCAAGAAGCAAGATGA 1857 0.4373 MRKSSKASSSSPSSKSEKKPHLRSSKDQWPETPDKLPQRSRNRGVALSVAEIRKVAEGLQDRKQRRETTSSQAKTARRQIALPSPSKPKTVTDEPSKLLEKYEILGEFFDSLDSSIRLLRLKGSMPSFTNISPSIERLTDRRFTHGHLAQLKFILPEAIEIKKLLVFDERTSCMKPDLHVTINPDAVESDAKLLPERRTGSLRKLFRTRLRDFCKSHSEVIPKNSNLHICLGDEIPEEMLPEPFNRPTPSSLPKEALSDASVTHPPAPLSACLQNNDIADNKDSANIEKNLSDNTDSANQQLAVAYHMSKAFTRRFSQKSKENGADNAQQNCPSDSFQPLTFPVSESSLKENCSYESTKSNPKTCPSEIASEAASSGLCPTVCASSSCFTSSSAPPATPSKTIEYTENKDGSLKSINATSTPAKLLCTPSRLMSATPALPAPKRAYMSPDDNSTSSLNKLVRRPPRTRSLKFDSPVKNEDVAGSLSIDDDIFDILPENLLQSIMEKERIAMEESDPAISQAKRRQKIIASLPKLFNMINLLFHSKNRSVITKEELISKIISSNCDIVDRSEVEDQLHLLLELVPEWISEKLASSGDFLFCINKMLNPETVRASLQEAR. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05940 618 CDD Cdt1_c 494 615 IPR032054 -
Seca7g05940 618 FunFam CDT1-like protein a chloroplastic 488 618 - -
Seca7g05940 618 MobiDBLite consensus disorder prediction 1 15 - -
Seca7g05940 618 SMART CDT1_2 98 242 IPR014939 -
Seca7g05940 618 Pfam DNA replication factor CDT1 like 101 199 IPR014939 -
Seca7g05940 618 MobiDBLite consensus disorder prediction 73 91 - -
Seca7g05940 618 MobiDBLite consensus disorder prediction 317 341 - -
Seca7g05940 618 MobiDBLite consensus disorder prediction 55 72 - -
Seca7g05940 618 SUPERFAMILY "Winged helix" DNA-binding domain 95 244 IPR036390 -
Seca7g05940 618 MobiDBLite consensus disorder prediction 16 38 - -
Seca7g05940 618 Pfam DNA replication factor Cdt1 C-terminal domain 498 590 IPR032054 -
Seca7g05940 618 CDD Cdt1_m 83 269 IPR014939 -
Seca7g05940 618 MobiDBLite consensus disorder prediction 322 341 - -
Seca7g05940 618 MobiDBLite consensus disorder prediction 1 94 - -
Seca7g05940 618 PANTHER DNA REPLICATION FACTOR CDT1 4 617 IPR045173 GO:0003677|GO:0030174|GO:0071163
Seca7g05940 618 Gene3D - 489 618 IPR038090 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05940 Seca-Chr7 159287629 159291465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05940 419 616 Core DNA Replication Machinery Family AT2G31270 49.533 2.04e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05940 K10727 - gmx:100778818 620.928