Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05937 ATGGCACTGAACAAGAACCATTCCTACAAGCTTGGATATCAAGCTCTCCCACCCATCATAACCCAGCCTAGTACTACACTCCATCACCCTCCACAACCTGTTTCAGACTATGCTTTTCCCATATTTGCCATTGTTGTTGTCAGCATCTTAGCCACCGTTTTGTTGCTCCTCAGCTACTTCACTTTTTTGACCAAATGCTGCTCAAACTGGCAACAATTTAACCCTCTGAGATGGATTTCCATCCTGAGAGCTCGACAGAATGAGGATCTCTTCATAGCATTGTCCCCTGCCATGTGGAACCGTGGCCTTGATGAATCTGTCATCAGAGAAATCCCAACCTTTCAGTTCATAAAAGGTGAAGGTGAGGATCATCATCATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGACTGAGTTTCAAGAACATGATGTGCTCAAAGTTTTACCAAATTGCAACCACGCTTTTCACTTGGATTGCATTGACATTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGATCAAGCATTTCAGGCAACACACACTGTCCATTTGAACATATCATAGCTCCAAGCTCTTCTCCTCAGGACTCTCAGTTACTTTCTAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTTGGTGGAGAACATGGGGGATTGTTACCACAGGTGCAACAAGAAAGAAATGACTCAAGGGGAAGCCTAGCAATAGCACAGAGTAGAATTCACTCTCAGAAGGTTGCACACTCAAAACCAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGCATTGATATCAGAAAGAAAGATGATCAGTTTTCTATTCAGCCTATTAGAAGATCTTTCTCAATGGATTCAGCAAATGATAGACAAGTTTACTTGGATGTTCAAGCAATTATACAACAAGATAGACATCAGAATGAGGCTAGTGCAAGCGAGGATTGTAATAGCAGAAGTCGAAGAGCATTCTTTCCATTCTGCTATGGAAAAGGGTCTAAAAATGCAGTCCTTCCTTTGGAGAATGATGTTTAA 1044 0.4195 MALNKNHSYKLGYQALPPIITQPSTTLHHPPQPVSDYAFPIFAIVVVSILATVLLLLSYFTFLTKCCSNWQQFNPLRWISILRARQNEDLFIALSPAMWNRGLDESVIREIPTFQFIKGEGEDHHHQSVYGCVVCLTEFQEHDVLKVLPNCNHAFHLDCIDIWLQSNANCPLCRSSISGNTHCPFEHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEHGGLLPQVQQERNDSRGSLAIAQSRIHSQKVAHSKPRKCHHVSIMGDECIDIRKKDDQFSIQPIRRSFSMDSANDRQVYLDVQAIIQQDRHQNEASASEDCNSRSRRAFFPFCYGKGSKNAVLPLENDV. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05937 347 CDD RING-H2_EL5-like 132 174 - -
Seca7g05937 347 PANTHER RING-H2 FINGER PROTEIN ATL16 21 344 IPR044600 GO:0016567|GO:0016740
Seca7g05937 347 Pfam Ring finger domain 132 174 IPR001841 -
Seca7g05937 347 SMART ring_2 132 173 IPR001841 -
Seca7g05937 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
Seca7g05937 347 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Seca7g05937 347 FunFam E3 ubiquitin-protein ligase ATL6 94 180 - -
Seca7g05937 347 SUPERFAMILY RING/U-box 131 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05937 Seca-Chr7 159256980 159258023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05937 30 310 C3H Transcription Factor Family AT1G04360 44.625 1.08e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05937 K19041 - gmx:100809883 563.148