Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05933 ATGTCTTCCCCTAATTTCTTTCAAAACCCAGATTTGGAAATGCTGCAGGAGCCTTCAGAAATTTTGTTCGAATCATATCCAAGCAATGATGACCCTTTTCATGATTCTCTTTCCTTCGACATGGTTGACTTTGACTTGTACCCAGAGGCACCAACAGAAGGAGACAACAACAGAGCAAAGCAATTGGTGAACAGGTCTATGCAGATGCAGAGTAATGATGATGATAATAATATTAATAAGGAAAGGTCATATATTGGAGTGAGGAAAAGGCCTTGGGGTAAATTTGCAGCAGAGATCAGAGACACAACAAGGAATGGTGCCAGGGTATGGCTTGGAACCTTTGACACTGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCTTTCTCCATGAGAGCCCATAATGCTGTTCTCAATTTTCCTGTCAAAATGGTCAAAGAATCTCTGCAACAGATCCAATGTGATTGCAGTACCAAAGGTTGTTCACCCGCACTTGCACTCAAGCAGAGGAACTGCATCCAAAGAAAATTGTCTTCGAAAGCTAAAAGGAGTAAAGGGAAATTACAGGTATCAGAGGCATCAAGAGTAGCAAATGTGTTGGTGTTAGAGGACTTGGGAGTTGAATATCTTGAGCAGCTTCTAACCATATCCGATCAAACTGCAACCAATAATAATTATAGCTATTTCAAATAA 693 0.4113 MSSPNFFQNPDLEMLQEPSEILFESYPSNDDPFHDSLSFDMVDFDLYPEAPTEGDNNRAKQLVNRSMQMQSNDDDNNINKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDTAEAAALAYDQAAFSMRAHNAVLNFPVKMVKESLQQIQCDCSTKGCSPALALKQRNCIQRKLSSKAKRSKGKLQVSEASRVANVLVLEDLGVEYLEQLLTISDQTATNNNYSYFK. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05933 230 Gene3D AP2/ERF domain 83 144 IPR036955 GO:0003700|GO:0006355
Seca7g05933 230 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Seca7g05933 230 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Seca7g05933 230 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Seca7g05933 230 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Seca7g05933 230 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Seca7g05933 230 FunFam Ethylene-responsive transcription factor 2 82 142 - -
Seca7g05933 230 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Seca7g05933 230 PANTHER DNA-BINDING DOMAIN 67 218 IPR044808 GO:0003700|GO:0009873
Seca7g05933 230 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05933 Seca-Chr7 159197767 159198480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05933 81 222 AP2-EREBP Transcription Factor Family AT3G23240 54.225 2.47e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca7g05933 AP2 7.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05933 K14516 - gmx:100527364 268.085