Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05926 ATGTCTAATGACATGACTTTGACTTCCCCTTTCTTTCAAAACCCAGATTGGGAGCCTTCACAAATTTCTTCAGAATCATTTTCAAGCAATGTTGTTGTTCATGATGATTATCTTTCCTTCGATATGGTTGACTTGGACTTCTCCATGGACTCAACAGAAGCAAAGCAATTGGTGAAGAATAATAACAAGAAGGAAAGGTCATCATATATAGGAGTGAGGAAGAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACAACAAGGAATGGTGCCAGGGTATGGCTTGGAACCTTTGATACTGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCTTTTTCCATGAGAGGCCACAACGCTGTTCTCAATTTTCCTGTCAAAATGGTCAAAGAATCTCTGCAACAGATCCAATATGATTGCAGTACCAACAGTTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCTTCATCAAAAGCTAAAAAGGGAAAAGGGAAATTACAGGAATCAGAGGCATCAAGTGTGATAGTGCTAGAGGATTTGGGGGTTGAGTATCTTGAGCAACTTCTAACCATATCCGATCAAACTGCAACCACTAGTTCTAGCTACTTCAAGTAA 639 0.4147 MSNDMTLTSPFFQNPDWEPSQISSESFSSNVVVHDDYLSFDMVDLDFSMDSTEAKQLVKNNNKKERSSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDTAEAAALAYDQAAFSMRGHNAVLNFPVKMVKESLQQIQYDCSTNSCSPALALKERHCIQRKLSSSKAKKGKGKLQESEASSVIVLEDLGVEYLEQLLTISDQTATTSSSYFK. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05926 212 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Seca7g05926 212 FunFam Ethylene-responsive transcription factor 2 67 127 - -
Seca7g05926 212 CDD AP2 67 127 IPR001471 GO:0003700|GO:0006355
Seca7g05926 212 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Seca7g05926 212 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Seca7g05926 212 PANTHER DNA-BINDING DOMAIN 29 201 IPR044808 GO:0003700|GO:0009873
Seca7g05926 212 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Seca7g05926 212 Pfam AP2 domain 68 119 IPR001471 GO:0003700|GO:0006355
Seca7g05926 212 SUPERFAMILY DNA-binding domain 67 128 IPR016177 GO:0003677
Seca7g05926 212 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05926 Seca-Chr7 159084398 159085084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05926 61 205 AP2-EREBP Transcription Factor Family AT3G23240 53.793 8.63e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g05926 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05926 K14516 - gmx:100812017 239.965