Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05921 ATGGAGGGAGAGAGATCATCATCTTCATCAGTTTCTTCAAATGGAAATACAGAAGTTCGGTATAGAGGGATTCGTAGGAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCCACAAGGAAAGGCACTCGCGTATGGCTTGGAACTTTTGAAACCGCTGAGGAGGCTGCACGGGCTTACGATGCTGCTGCTTTTCATTTCCGTGGTCACAGAGCTATTCTCAACTTCCCAAATGAGTACCAGGCTCCTAATCCAAACTCTAATTCATTACCTATGCCTCTCACTCTGCCTCCATCTTCTTCTTCCTCTTCCTCCTGCTCTGCTAATAATTATAAGGGCCTTGTCAGTGATGACACTTTTGAGTTGGAATATTTGGATAATAAGTTGCTGGAAGAACTCCTTCAGGCTCAGGCGCAAGATGACAGGCACAAGTGA 438 0.4635 MEGERSSSSSVSSNGNTEVRYRGIRRRPWGKFAAEIRDPTRKGTRVWLGTFETAEEAARAYDAAAFHFRGHRAILNFPNEYQAPNPNSNSLPMPLTLPPSSSSSSSCSANNYKGLVSDDTFELEYLDNKLLEELLQAQAQDDRHK. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05921 145 PANTHER DNA-BINDING DOMAIN 12 138 IPR044808 GO:0003700|GO:0009873
Seca7g05921 145 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Seca7g05921 145 Pfam AP2 domain 20 71 IPR001471 GO:0003700|GO:0006355
Seca7g05921 145 MobiDBLite consensus disorder prediction 83 109 - -
Seca7g05921 145 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Seca7g05921 145 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Seca7g05921 145 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Seca7g05921 145 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Seca7g05921 145 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Seca7g05921 145 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Seca7g05921 145 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05921 Seca-Chr7 159040852 159041289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05921 16 138 AP2-EREBP Transcription Factor Family AT3G23230 61.789 5.38e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g05921 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05921 - - gmx:100779173 162.155