Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05918 ATGGAATTTGATTCTTCTTTCTTCCAATACCAATACCAATACCAAAACCTTAACTCTTCCTTTGCAAATTCCTCTGTTTCTGCAGAGTCTTTCTCTTGGGAGGACTTCTTTTTCTTCAATGAAGACAATACCACCCTTCCTCCCTTTAACTTCACTGATGACCACTCATCACAAATCAAGGAATCATCTTTGGATTCCAACACTTCAGGCTCTCTAGTTAGCACTGAATCACAAGAAGTCTCCTCCAATAATTCAATTCATATCCAAGTCAAAGAAACAGATCATGCATTATCACCACCCAAGGAAGAGGAAAGTAGTAATAACAGAGAGAAGAGGCCTTACAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTTGCTGCAGAGATAAGGGACTCAACAAGAAATGGGGTTAGAGTGTGGATTGGCACATTTGACACTGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTGTCCACAAGAGGTTCCATGGCAGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAGTCACTCAAAGACATGGTCAACAAGCCATGGGAAGATGGTTCCTCTCCTGTGTTAGCACTCAAGAGGAAGCACACAATGAGAAGAAAGTCCAAAACCACTAACAAAAAGACCAAAAGGGACAGCACTAGCAGGGAGATAGAGATGCTTTCTCAAAATGTGCTGGTTTTGGAGGATTTGGGTTCTGAATATCTAGAGCAACTTCTGAGCTTGACTTCTTCTGAATTGCCATTTTAG 765 0.4248 MEFDSSFFQYQYQYQNLNSSFANSSVSAESFSWEDFFFFNEDNTTLPPFNFTDDHSSQIKESSLDSNTSGSLVSTESQEVSSNNSIHIQVKETDHALSPPKEEESSNNREKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMVNKPWEDGSSPVLALKRKHTMRRKSKTTNKKTKRDSTSREIEMLSQNVLVLEDLGSEYLEQLLSLTSSELPF. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05918 254 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Seca7g05918 254 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Seca7g05918 254 FunFam Ethylene-responsive transcription factor 2 112 172 - -
Seca7g05918 254 MobiDBLite consensus disorder prediction 49 91 - -
Seca7g05918 254 Gene3D AP2/ERF domain 113 173 IPR036955 GO:0003700|GO:0006355
Seca7g05918 254 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Seca7g05918 254 MobiDBLite consensus disorder prediction 94 112 - -
Seca7g05918 254 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Seca7g05918 254 MobiDBLite consensus disorder prediction 200 221 - -
Seca7g05918 254 MobiDBLite consensus disorder prediction 49 116 - -
Seca7g05918 254 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Seca7g05918 254 PANTHER DNA-BINDING DOMAIN 71 246 IPR044808 GO:0003700|GO:0009873
Seca7g05918 254 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Seca7g05918 254 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05918 Seca-Chr7 159013147 159013911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05918 106 246 AP2-EREBP Transcription Factor Family AT3G23240 62.676 8.80e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca7g05918 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05918 K14516 - gmx:100784784 279.641