Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05912 ATGAGATGTTGGGAAACAGTTGAACCACAGAAATCTCTACCTACACATTATTGTTTCGGATGGTCAGCTATTGCAGCAAGATTGCCGGGGCGCACAGATAACGAGATAAAGAATGTGTGGCACACTCACTTGAAGAAGAAGAGGCTGCCAAATGCAAAACAAATGCCGTCGCCCCAAAAGTTCAAGTTCAATATACAAGAACCCGTGATCAATTTTCCCACTCTCATCAAAGCCGAAAGAACAGAGGAAAGGCCACTATCTCCTCCACACTGTTCGAGTACCCTCACCACTAGTGAAAGCAGTGAACACAACGTTAACAGTAGCTTAGTTACTAGTACTATTAAATGTCACATGGCCATCAATAACACTAGTACTGATGAATCCCTATTATATGATGATTTCTGGTCTCAAGTTTTTTCAGCTGATAATTCCGTTGAGATAAGCAGTTTTCCCAAGTTTCAATTTCCATTATTGACCGAAGAAGGGGTCCATCTTGCTATTAGTTCATCATCTAGCACGGACTTTTGGTATGATGTTTACATGACAGCTGAGGAACTGCCAGAATTCTTATAA 573 0.4119 MRCWETVEPQKSLPTHYCFGWSAIAARLPGRTDNEIKNVWHTHLKKKRLPNAKQMPSPQKFKFNIQEPVINFPTLIKAERTEERPLSPPHCSSTLTTSESSEHNVNSSLVTSTIKCHMAINNTSTDESLLYDDFWSQVFSADNSVEISSFPKFQFPLLTEEGVHLAISSSSSTDFWYDVYMTAEELPEFL. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05912 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 48 IPR017930 -
Seca7g05912 190 MobiDBLite consensus disorder prediction 81 102 - -
Seca7g05912 190 MobiDBLite consensus disorder prediction 87 102 - -
Seca7g05912 190 SUPERFAMILY Homeodomain-like 16 48 IPR009057 -
Seca7g05912 190 ProSiteProfiles Myb-like domain profile. 1 44 IPR001005 -
Seca7g05912 190 Gene3D - 5 67 - -
Seca7g05912 190 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 144 - -
Seca7g05912 190 CDD SANT 21 44 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05912 Seca-Chr7 158931271 158933414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05912 8 189 MYB Transcription Factor Family AT2G31180 31.383 5.19e-17 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g05912 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05912 K09422 - gmx:100802214 122.864