Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05896 ATGGGTCTTAAAGACGTTGGTGCTTCATTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTAGTCCTTCATTACCTTTACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGACTTGCACACTTGCGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAACCGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACTGGCTATCGGACCAATCGTGCCACGACATCTGGCTATTGGAAAGCAACAGGGAAAGATCGTACGGTGTTCGATCCAATCACGCGTGAGGTTGTGGGAATGAGAAAAACTTTGGTGTTCTATAGGAATAGAGCTCCCAATGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTATTTCACAAAGGCAAAGCAGACGACAACAGTAATGCCAAACTCATGTTTGAGAGCATAACTCCATCCCTAACTTTGGCTTCATCATCCCCAACCATGCCAGTTGGGTATAACCAACTTCCCCCTTTCTCTTCCTCAATTCATCATCACCCAAACCAAAATAACTCTTTCATGAATCTCCTTCACTTTTCTCATCAAGAAACTAATAACACCAACTGTAGTAGCGTTACTCAAATTAGCCCCAAATGTGACGATGGATATGGCTTCTTATGGGACATGGATCTCGAAGAAAATAGCGCCTTCCAAGATGGTGTGGCCCCAGATTTGGACAGAATGAGATTCGAGATTGATAATAATAATAATAGCATGGTGTTGTTGTAA 837 0.4421 MGLKDVGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADDNSNAKLMFESITPSLTLASSSPTMPVGYNQLPPFSSSIHHHPNQNNSFMNLLHFSHQETNNTNCSSVTQISPKCDDGYGFLWDMDLEENSAFQDGVAPDLDRMRFEIDNNNNSMVLL. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05896 278 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 216 - -
Seca7g05896 278 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Seca7g05896 278 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Seca7g05896 278 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Seca7g05896 278 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05896 Seca-Chr7 158700343 158705626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05896 6 237 NAC Transcription Factor Family AT1G56010 44.309 7.78e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g05896 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05896 - - gmx:100783645 453.366