Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05889 ATGGAGGAAGAGCAGGATCGAAATTTGCTCACTAGTTTGGGCGTAAAGTCTGCCAATCCCGAAGACATTGAACGCCACGTTTTGGAAAAGGCTAGGACTAGGAATGATGTTGCTGAAGCTGAAGGGAGCACCAAGGAAGAATGTTCTCATTTACCTGAAACTTTTGATCCATCATCCACTGCCAAAGCGGAACTTCTTCAAAAGCTTAGGGCAGTAGAATTTGAAATAAATGCAGTCTCTTCCACTATTCGAGAATGTAGTGATGGTGGTGAGGACAACTCGGAGCAAGGGATCGCTGAGGGTGATTCCTCCGATGGTTCAAACCTTCAGCGCGTTCTTGCTGCTGATAGGCTGAGAAGCCTGAAGAACACAAAGGCTCAACTAGAGAAAGAGCTTGCGAATTTGTCTAAGGATAATGCTTCTGAAAGGGCTGACCATGAAAAACTGATCTTTAGCTTAGTTAGGGAAGACCGAAAGCCCCCCAAGAGGAAGCTTAAAGATCTTAAAAAATTGCACAAAAGCACGGGAAAGCAGGCTAAGACAGTCACTGGAAAACGGCTTAAGACAGTCTCATTTGATGATGATATTGATTTTGATGCTGTTCTGGATGCAGCATCTGCAGGCTTTGTTGAAACGGAAAGGGATGAATTGGTCAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGCTTTCAACAACCTGACACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATATCGATGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCAATGTCTGAGGCAGCAAGAGCTCGCCCGACCACCAAGCTGCTTGAGTCTAAAGATGTACCCAAACTTGATGCACCCACTTTTCCATTTCGCAGGCTCAAGAAACCACTAAAATTTCCCAAACATCTAAACAGAGAGGTGGAGCTGGATAAAGATTCAAAAAGGAAAAAGAGGCGACCTTTGCCTGATAGAAAATGGACCAAGCGTGTTTCTTGTGAGGATATGCAGCTGGAAGAAAATGAAAATGCAAACGGTTGCTTGGACACTTCCAGTTGTGAAAATTTAGAAGCACAAGATGATGAACATGCTGAGTACGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATCCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTATTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTTGAACTTTTGCATGATTCTGCTCAGGATTCTTCTCCTAGAAAAAAGCGAGCTAAATCCGATGAATCAGACTATGAAAGCAATAGTTCAAGTGACAATGATTATGGGAAAAGTGCACCATCTAGAAATGGAAGAAAATGGGAATCCCTGATAAATCGCGTCACAAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGGATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAATAACCTTAGTCTGCAAGCAGCTACAAACTATACACCGCATCATAATGACTGGTGCGCCTATTCAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATATCTGTTGGTGGGTATGCAAATGCTTCACCATTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTAAATGCTCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTAGATGGACACAGGAATTCTCTTTCTGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGGGACCATGCCTTCAGGAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGATTTTTTTGACTAATTCTGGTCATATTTACCGGAGAATGGATGGTCTCACTCCTATAAAACAGAGGATGGCTTTAATAGATGAATTTAATGACTCAAGTGAGGTATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGAACAAATCTTACCGGTGCAGATAGGGTGATCATCTTCGACCCTGATTGGAATCCTTCAACTGATATGCAGGTAAGTTTGCATTTTAATACATTATTTTATTCTTTAATTTGTTGA 2565 0.414 MEEEQDRNLLTSLGVKSANPEDIERHVLEKARTRNDVAEAEGSTKEECSHLPETFDPSSTAKAELLQKLRAVEFEINAVSSTIRECSDGGEDNSEQGIAEGDSSDGSNLQRVLAADRLRSLKNTKAQLEKELANLSKDNASERADHEKLIFSLVREDRKPPKRKLKDLKKLHKSTGKQAKTVTGKRLKTVSFDDDIDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPDTSTSHNAAEEENIDDLASSSVERAARSMSEAARARPTTKLLESKDVPKLDAPTFPFRRLKKPLKFPKHLNREVELDKDSKRKKRRPLPDRKWTKRVSCEDMQLEENENANGCLDTSSCENLEAQDDEHAEYESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSSPRKKRAKSDESDYESNSSSDNDYGKSAPSRNGRKWESLINRVTRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEITLVCKQLQTIHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGHRNSLSGIDVMRKICNHPDLLERDHAFRNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEIFLTNSGHIYRRMDGLTPIKQRMALIDEFNDSSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQVSLHFNTLFYSLIC. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05889 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 653 IPR027417 -
Seca7g05889 854 FunFam Protein CHROMATIN REMODELING 8 370 652 - -
Seca7g05889 854 CDD SF2_C_SNF 735 840 - -
Seca7g05889 854 Pfam Helicase conserved C-terminal domain 742 840 IPR001650 -
Seca7g05889 854 Coils Coil 111 145 - -
Seca7g05889 854 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 854 IPR001650 -
Seca7g05889 854 SMART ultradead3 388 620 IPR014001 -
Seca7g05889 854 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 404 603 IPR014001 -
Seca7g05889 854 SMART helicmild6 766 844 IPR001650 -
Seca7g05889 854 Pfam SNF2-related domain 395 717 IPR000330 GO:0005524|GO:0140658
Seca7g05889 854 Gene3D - 359 652 IPR038718 -
Seca7g05889 854 MobiDBLite consensus disorder prediction 1 56 - -
Seca7g05889 854 MobiDBLite consensus disorder prediction 477 493 - -
Seca7g05889 854 MobiDBLite consensus disorder prediction 84 108 - -
Seca7g05889 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 840 IPR027417 -
Seca7g05889 854 MobiDBLite consensus disorder prediction 234 286 - -
Seca7g05889 854 Gene3D - 659 842 IPR027417 -
Seca7g05889 854 MobiDBLite consensus disorder prediction 19 52 - -
Seca7g05889 854 CDD DEXHc_ERCC6 392 602 - -
Seca7g05889 854 PANTHER SNF2/RAD54 FAMILY MEMBER 138 840 - -
Seca7g05889 854 MobiDBLite consensus disorder prediction 477 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05889 Seca-Chr7 158614565 158618848 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05889 380 619 RAD5 or RAD16-like Gene Family AT3G16600 26.255 2.90e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g05889 SNF2_N 1.8e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05889 K10841 - gmx:100820025 1349.73