Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05887 ATGATGAGAGTTGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCGTCCCCACATGCATGAAACTTGGGACTACCCAAATATTGCTGATTTGCAAGCTCCAATTCCAACCCCATCAAATCAATATCCAAAGCCACCAACTGAAAACCACTACCTAAACTTGGGGCAGAATGAGGTTTGTGATTGGGTTGAACACATTTCCAAACACCTTGTTGAAGACATACCAGAAACCACTTCTGATAATAACAACTTGCTAGCCAATACCCCAATAACAAGAGCTTCCCATGACAACCTTGTTCCCTCACTACTTTCACCCAATTTCAATCCAAGAAAATCCTCCTTCACCAATGACCCCCTAAACAGCAATAATTTCAACCCTCACATTCAATCAAACACCTTAGATTTTGATCATAACAACAATAATGTTTATGATCATGGGTTAAACCTGATAACCCTTCTAATGGAATGTGCAGTAGCAATCTCTGTTGACAACCTTGGTGAGGCTCACAGAATGTTACTAGAGATAACACAAGTAGCCTCTCCTTATAAACCATCATGTGCAGAACGTGTTGTTGCTTATTTTGCAAAGGCCATGACTAGCAGGGTAATGAATTCATGGCTTGGTGTATGTTCCCCTTTAATTGATCAAAGGAACATTCACTCATCATTCCAAGTTTTCAACAACATTTCCCCTTTCATAAAGTTTGCTCATTTCACTTCCAACCAAGCCATCCTTGAAGCAGTGAACCGAACTAACAGCATTCACATCATTGATTTAGACATCATGCAGGGGCTTCAATGGCCACCCTTTTTCCACATACTTGCCACCAGAATGGAGGGTCCACCTGAGGTTAGAATGACAGGCATGGGAACCTCAATGGAACTCCTTGTTGAAACAGGAAAACAGCTCTCCAACTTTGCAAGAAGGTTAGGATTGTCCTTCAAGTTCAACCCTGTTGCAACCAAGTTTGGGGAAATTGATGTTTCCATGGTGCAAGTGAGGCATGGTGAGACACTTGCAGTGCATTGGTTGCAGCATTCTTTGTATGATGCAACTGGACCTGATTGGAAAACATTGAGGCTTCTTGAGGAGTTGGAGCCAAAAATCATAACTTTGGTAGAACAAGATGTGAACCATGGAGGGTCTTTCTTGGACCGTTTTGTTGGCTCTTTGCACTATTACTCTACCCTTTTTGATTCTCTTGGAGCATATTTGCATAGTGATGATTCTAGCAGGCAAAGTGTGGAGCATGGCCTTCTCTCTAAGGAGATCAACAATATATTAGCCATAGGAGGCCCTGCAAGGAGTGGAGAGGACAAGTTTAGGCAGTGGAGAAGTGAGCTTGCAAGACATTGTTTTGTGCAGGTTCCAATGAGTGCAAATTCAATGGCACAAGCACAGTTGATATTGAACATGTTTTCACCAGCTCATGGGTATAGCCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACAAGTTTGTATACAGCTTCTGCATGGACCTCTAGTACTTCTAGGTAG 1533 0.422 MMRVGFEVLHANPNMIRPHMHETWDYPNIADLQAPIPTPSNQYPKPPTENHYLNLGQNEVCDWVEHISKHLVEDIPETTSDNNNLLANTPITRASHDNLVPSLLSPNFNPRKSSFTNDPLNSNNFNPHIQSNTLDFDHNNNNVYDHGLNLITLLMECAVAISVDNLGEAHRMLLEITQVASPYKPSCAERVVAYFAKAMTSRVMNSWLGVCSPLIDQRNIHSSFQVFNNISPFIKFAHFTSNQAILEAVNRTNSIHIIDLDIMQGLQWPPFFHILATRMEGPPEVRMTGMGTSMELLVETGKQLSNFARRLGLSFKFNPVATKFGEIDVSMVQVRHGETLAVHWLQHSLYDATGPDWKTLRLLEELEPKIITLVEQDVNHGGSFLDRFVGSLHYYSTLFDSLGAYLHSDDSSRQSVEHGLLSKEINNILAIGGPARSGEDKFRQWRSELARHCFVQVPMSANSMAQAQLILNMFSPAHGYSLAQVDGTLRLGWKDTSLYTASAWTSSTSR. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05887 510 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 501 IPR005202 -
Seca7g05887 510 Pfam GRAS domain family 150 505 IPR005202 -
Seca7g05887 510 ProSiteProfiles GRAS family profile. 141 505 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05887 Seca-Chr7 158603974 158605506 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05887 111 505 GRAS Transcription Factor Family AT3G54220 52.311 4.29e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca7g05887 GRAS 1.8e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05887 - - gmx:100775656 808.905