Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05881 ATGGATCATGTGATTGGTGGGAAGTTTAAATTGGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAGCTCTATCTAGGTGTTAATGTACAAAGTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGGTTCCCCACCTCAAGTGGTTTGGAGTTGAGGGCGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGCCTAGAAGATTTATTCAATTACTGTAACCGGAAGTTCACATTGAAGACAGTTTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTGCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGTAAAGCAAATCAAGGTGCCAATAGAAGTCTTGTGGAAGACTTTCATGGATATCTGACTCAACCCTTAAGTGAATCCTTTGATAGGACTTCATTTGGTAGCCTCCTTGTGGTCAAAGTCAAAGCAACCGGCTTCTTTAGGGTGTACATTATTGATTATGGCCTTGCAAAAAAATACAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACGAAGGTTAGATATTCTGATGCCATGGAGGTTAATATGATGCGTCAGGTGCTCTGCAAATCATATCCCTCTGAGTTTGTATCTTACTTCCACTATTGCCGATCATTGAGGTTTGAGGACAAGCCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTCGACTGGACTATATTGAAGTATCCACAGATTAGTGGCAGCTCTAGAGGGCGGCATGGCACTGGCAAGGCAGCTATGAATGCGGGTCCAACTCTACAAAAACCAGAAAAGATCTCAGCTGGGAAAGACATTCGAGAGAAATACTCTGGTACTGTTGAAGCATTCTCCCGGAGGAACCACGGAAGCTCTAGTCCTCACCATGGCGATCACACCAAACATAGGACTTTTGAGGATGTACCTGTGCACAAGGATTTGCACTATGCCCAACACAGTTCCACTAGATATGGCAGCAGCTCAAGAAAAGCCATAATCTCATCAAACAAGCCAATTTCTTCAGGTGACCACACTGGCAGGCTAACCTCAAGTGGGGGCCGTCCATCTGCTACACACAGAATTCAACCTGTGTATGACACCAAACAAGCAACTTATACACGCAATGGTTCTATGAGAGGCAACCGTGATGATCCTCTGAGGAGCTTTGAGCTTCTCTCTATCAGGAAGTAA 1515 0.433 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQGANRSLVEDFHGYLTQPLSESFDRTSFGSLLVVKVKATGFFRVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVRYSDAMEVNMMRQVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQISGSSRGRHGTGKAAMNAGPTLQKPEKISAGKDIREKYSGTVEAFSRRNHGSSSPHHGDHTKHRTFEDVPVHKDLHYAQHSSTRYGSSSRKAIISSNKPISSGDHTGRLTSSGGRPSATHRIQPVYDTKQATYTRNGSMRGNRDDPLRSFELLSIRK. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05881 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca7g05881 504 Gene3D Transferase(Phosphotransferase) domain 1 174 389 - -
Seca7g05881 504 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Seca7g05881 504 MobiDBLite consensus disorder prediction 426 492 - -
Seca7g05881 504 SUPERFAMILY Protein kinase-like (PK-like) 4 340 IPR011009 -
Seca7g05881 504 SMART serkin_6 9 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05881 504 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca7g05881 504 Gene3D Transferase(Phosphotransferase) domain 1 87 136 - -
Seca7g05881 504 MobiDBLite consensus disorder prediction 427 486 - -
Seca7g05881 504 PANTHER CASEIN KINASE-RELATED 9 400 - -
Seca7g05881 504 Pfam Protein kinase domain 10 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05881 504 ProSiteProfiles Protein kinase domain profile. 9 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05881 504 MobiDBLite consensus disorder prediction 350 380 - -
Seca7g05881 504 FunFam Putative Casein kinase I 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05881 Seca-Chr7 158540821 158547650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05881 8 152 MAP Kinase Kinase Kinase AT3G06030 29.747 6.48e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca7g05881 Pkinase 9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05881 - - gmx:100789031 816.994