Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05873 ATGAAAATTCTTCAAGATTTAGTCCCTGGTTGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATAAATTACATCCAGTCACTGCAGCGTCAGGTTGAGGTAGACATCATCTTCATCTTTCTATCTCTACTTGAGGCAGTTAATTTGAGATTGACCATGAACCCTACTATTGAATGTTTTCCATCAAAAGATGTAAGTCTATCGACTTTAGTATGTTAA 228 0.3596 MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEVDIIFIFLSLLEAVNLRLTMNPTIECFPSKDVSLSTLVC. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05873 75 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 37 IPR036638 GO:0046983
Seca7g05873 75 Gene3D - 1 39 IPR036638 GO:0046983
Seca7g05873 75 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 67 IPR024097 GO:0006355
Seca7g05873 75 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 31 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05873 Seca-Chr7 158452173 158452582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05873 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 72.000 2.78e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05873 - - ahf:112748872 107.071