Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05868 ATGAAGTGTCTACGCTCAGGGGAGCCTTTGGGAGGAGTAGATGAAGTGTTTCCTTCATCTGAATCTCTTGTAATCAAGGACCTTTCCGCAAGTGGACATTCTTGCCTAGCCGGACAAGTTGATAAGAAGCCGGATACTGGCAATATAGAAGAAGCTGAATCATCTCTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTTTGCTAGGAAGATATGAATATCAGAAAGGAAACATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAGAGAACGCCATAAGAAATATTCTCATAATCATGCCGAACCCCAAATATCTATACATGCTGTTGGTTTACTGTTGGAATCAGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTGGAATCTTCATTGCCCGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTACTTTGTCTTACCGGCGAGCACTCCTCCATCAATGGAATCTTGATGCAGAGACTATAGCAAGGATCCAGAAAGAGTTTGTTGTTTTTCTTCTATATAATGGAGGGGAAGCAACACCCCCTGATCTCCGTTCCCAAATGGATGGCTCATTTGTACCAAGAAACAACACAGAAGAGGCTATACTTCTTTTGATGATTTTGCTAAGAAAAGTCACTCTTAATAGAATTGAGTGGGATCCTTCAATTCTAGACCACCTTTCATTTGCCCTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTCCCTGGGACCATCCATCGAAGAGATAGGTACCATGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGAATCTTCTAAAAACATTGTTGAGAAATAGAGAGGACCCAAAACATGTTCCAGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTAGTCTAGCAGGAGAAGGGGCAAGCTTTGCTCAGAGAGCACTTAAGAGCTTGGATGGAAGATGTAATCAGTTAGAAAATCTCGCCAATTTCTTTCTAGGTGTTTCATTTTCAACAAACTCAAAATTGGCCATTTCTGATTCTGAGAGGTCTAAGAGACAATCTGAGGCACTGCATTCCCTGGAAACTGCTGGCAGAATGACCAAGATGAGAGAGCCCCTTGTACTATACCATCTTAGTTTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTTATTATGCAAAGTGCTCTCTAAAACTGGAAGGTGGTTCTAACGTAAAAGGGTGGTTATTGGTAGCTCGGATATTATCTGCTCAAAAACGGTTTTTGGATGCCGAATCTATTATCAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGTTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCGCAGGGCCAGTTAAGGAGTGCCATTGAGACATATACTCAACTTCTGGCTGTTCTTCAAATTCAGAGTAAAGGTTATGGTTCTTGGAAGAAGCTATATAAGGATAATAGAGATTGTGCTAGGAACTTTGAAGTGGAAATATGGCATGATCTTGCTTATGTGTACATCAGTCTTTTGCAGTGGCATGATGCAGAGGTGTGTCTTCTAAAATCGAAGGCCATTAAACCATACTCTGCTTCTAGATGTCATGCACTAGGTACAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTCCGTGATGCTTTGGACATTGACCCTAGCCATGTACTGAGCTTAATCTCCACTGCTTTAGTTCTTAGACGATGCAGTGATCAATCAAACCCTGCAGTCAGAAGCTTACTGATGGATGCACTAAGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGTATCATCATTAGTTGAAGCTGCAGAATGTTTTCAAGCAGCAAACTTTCTTGAAGAATCTGCACCTGTTGAACCTTTCAGATGA 2139 0.4165 MKCLRSGEPLGGVDEVFPSSESLVIKDLSASGHSCLAGQVDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRNRERHKKYSHNHAEPQISIHAVGLLLESVFLKAKSLQVLGRFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCPREATLSYRRALLHQWNLDAETIARIQKEFVVFLLYNGGEATPPDLRSQMDGSFVPRNNTEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPGTIHRRDRYHALALCYYGAGKDLVALNLLKTLLRNREDPKHVPGLLMASKICCENSSLAGEGASFAQRALKSLDGRCNQLENLANFFLGVSFSTNSKLAISDSERSKRQSEALHSLETAGRMTKMREPLVLYHLSLEYAEQRKLDAALYYAKCSLKLEGGSNVKGWLLVARILSAQKRFLDAESIINAALDQTGKWDQVDLLRTKAKLQIAQGQLRSAIETYTQLLAVLQIQSKGYGSWKKLYKDNRDCARNFEVEIWHDLAYVYISLLQWHDAEVCLLKSKAIKPYSASRCHALGTMYEAKGLYKEALKAFRDALDIDPSHVLSLISTALVLRRCSDQSNPAVRSLLMDALRHDRLNASAWYNLGLLHKAEGTVSSLVEAAECFQAANFLEESAPVEPFR. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05868 712 SUPERFAMILY TPR-like 508 684 IPR011990 GO:0005515
Seca7g05868 712 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
Seca7g05868 712 Gene3D Tetratricopeptide repeat domain 253 544 IPR011990 GO:0005515
Seca7g05868 712 SMART tpr_5 132 165 IPR019734 GO:0005515
Seca7g05868 712 SMART tpr_5 600 633 IPR019734 GO:0005515
Seca7g05868 712 SMART tpr_5 439 472 IPR019734 GO:0005515
Seca7g05868 712 SMART tpr_5 566 599 IPR019734 GO:0005515
Seca7g05868 712 SMART tpr_5 474 507 IPR019734 GO:0005515
Seca7g05868 712 SMART tpr_5 510 543 IPR019734 GO:0005515
Seca7g05868 712 SMART tpr_5 670 706 IPR019734 GO:0005515
Seca7g05868 712 SUPERFAMILY TPR-like 427 534 IPR011990 GO:0005515
Seca7g05868 712 Gene3D Tetratricopeptide repeat domain 545 707 IPR011990 GO:0005515
Seca7g05868 712 PANTHER PROTEIN NPG1 1 712 IPR043376 -
Seca7g05868 712 Pfam Tetratricopeptide repeat 601 633 IPR019734 GO:0005515
Seca7g05868 712 Coils Coil 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05868 Seca-Chr7 158387034 158392513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05868 1 712 Calmodulin-binding Proteins AT4G28600 58.564 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05868 K21843 - gmx:100800762 1213.36