Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05853 ATGGCACCCAATCCAAAAGTGGCACAAGCCTATCGCGCAATGGCAAATCTTGGGATTTCTGAATCACAAGTGAAACCAGTATTAAAAAAACTCCTCAAATTGTATGATAAAAATTGGGAACTCATTGAGGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAGGATGATGAATATAAGGTGCCAGAACAGAAAAAGAAAAGCAAGAAAGTTAATGCTATAGCTGCTAAAATGTCTTCTGTCTTTTCAAACAATCAGGAAGAAGAGATGGAGGGTGAAGAAGCTCAGATGCATGTTGAACCCGCCCGTCCTTTGAAAAGGTTGCGCTTAAGAGGCCAAGAGAGTCAGCCTTTGCATCCTCCAACTATCAATTCCCATGGCTCAGATGCCTCTCCTTTAAAAAAGCTTAGATCAGAAGACAACACATCCGCGGAGGGCTGTTCTAGAAAGCAGCCTCAAAGTCAAAACAAAGCTGTGTCATCTGATGGAAATGTGAGGATTGAAGCACGCCCAGTTCCATCACGAGATGGTATTGTTGACAAAGGAAAGCAACCTGCATCACCCCAAGATGCTCTTAGAGGGAGAAGACTTCTATCTGAAAGAGCATCCCCATCAATACCATCTAAAGAACCAACAGTTGGACCAGGAAAGTTTCCATTGCCAAATGACCAAATGCCTCGTACTCATGCCTTGATCATACCCAAGGATGAGCCTATTGATGAAATTCCTGATTATGAGGTTCCCGTTGCAGTGATTCCTCCTGAACCATCAAGTTTAAGGAACTCATCAATGAATAATGGCATAACTGGAAAGCAAGATGGCCATATCACTGTGGCATCATCGCAACGCAGAGATGAAGATATTCTTCATTCGTCAAATGAAGAAGAAGCAATGTCTAATGTAGAGATTGCCACGTCAACTTTGGGAGAAGTAAAACTTTCTCTTAGCGGTAACTCAAGTCTTTTGGGGCCAGATTTTCATATGCCTAGTCGAGAGAAACTTATAAAAATGATGGTGGATAAATGTCAGCGATCATATAAAATCACTGACCCGAGTTTTTCTGTCCCTAAATTTTTTAGGCAAATATGTGATTGCATGTTAGAATTTATAACTGATTCAAATGATAACTCACAAGAAGGTTCTAGAACAAGATCAAGTGTTGATTTATTGAAGGAATCAGAGGCACATGACACACTGAGTGCTGGGGGAAATAAAGATCTGGACATGCTTCCTCACTCATCAAATGGACCAATCAATGGTATTAAGTCTTCTCCTACCTTGGTTTCACCCCGCAGTCCCTTTTCTCTAGCCCACCTGACTGGTCGGGATGATGCTGTATTGGTTTCCAAGATGAACATGACAAATGATTTTTCACGAAGTGATGTCAGAAAAGAGCCCGAGGATCCCATGTCTCCAAATTCCCATAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATGTAAGGTCTTTTCATGATTCTGATGACCTTACAAAAGGAGAAGAAAATGTTAAAATTTCCTGGGTGAATGAATCTACTCATGATTTTCCACCATATTTTAACTACATACCCCAAAATCTTGTGTTCCAAAATGCTTATGTTAACGTTTCTCTATCCCGTATTGGGGGTGAGGATTGTTGTTCACCCTGTATGGGCAATTGTGTCTTGCTGTCTACACCCTGCACTTGTGCAAATAAAACGGGGGGTGAATTTGCATACACTGCACAAGGCCTACTGAAGGAAGAATTTTTGGAAGAGTGCATTGCCATCAGTCGCCACCCTCAACAACATTACTTCTATTGCAAAGATTGCCCACTTGAAAGATCTAAGAATGATGTTTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGTAAAGAATGTGGCAATCGGGTTACTCAGCGAGGAATAACTTGCAACTTGCAGGTATTTTTCACTTCAGAGGGGAAAGGATGGGGTCTTCGTACATTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCACCAAAGAGTTGCATGAGAGGAACATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTAGACGCAGATTGGGATTCAGGATTTGTTAAGGATGAAGAAGCTCTATGCTTGGATGCAGCATCCTTTGGCAACACTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGGCCCAGATCATTACTACTATCATTTGGCTTTTTTCACTTCCAGAAAAATAGTAGCACAGGAAGAGCTCACTTGGGATTATGGTATTGACTTTGATGACCATGATCATCCTGTCAAGCTATTCCAGTGCAGATGTGGTAGTAAATTCTGCAGGAATATGAAGCGAACGAATAGATCCGGTAGATCTGCATCAATTGCAAGATGA 2481 0.4119 MAPNPKVAQAYRAMANLGISESQVKPVLKKLLKLYDKNWELIEEENYRALADAIFEDDEYKVPEQKKKSKKVNAIAAKMSSVFSNNQEEEMEGEEAQMHVEPARPLKRLRLRGQESQPLHPPTINSHGSDASPLKKLRSEDNTSAEGCSRKQPQSQNKAVSSDGNVRIEARPVPSRDGIVDKGKQPASPQDALRGRRLLSERASPSIPSKEPTVGPGKFPLPNDQMPRTHALIIPKDEPIDEIPDYEVPVAVIPPEPSSLRNSSMNNGITGKQDGHITVASSQRRDEDILHSSNEEEAMSNVEIATSTLGEVKLSLSGNSSLLGPDFHMPSREKLIKMMVDKCQRSYKITDPSFSVPKFFRQICDCMLEFITDSNDNSQEGSRTRSSVDLLKESEAHDTLSAGGNKDLDMLPHSSNGPINGIKSSPTLVSPRSPFSLAHLTGRDDAVLVSKMNMTNDFSRSDVRKEPEDPMSPNSHSLVVVPQHQLTADDVRSFHDSDDLTKGEENVKISWVNESTHDFPPYFNYIPQNLVFQNAYVNVSLSRIGGEDCCSPCMGNCVLLSTPCTCANKTGGEFAYTAQGLLKEEFLEECIAISRHPQQHYFYCKDCPLERSKNDVCLEPCKGHLKRKFIKECWSKCGCGKECGNRVTQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTTKELHERNMKCTENGKYTYPVLLDADWDSGFVKDEEALCLDAASFGNTARFINHRCFDANLVEIPVEVEGPDHYYYHLAFFTSRKIVAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRTNRSGRSASIAR. 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05853 826 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 826 IPR025776 -
Seca7g05853 826 SUPERFAMILY SET domain 506 810 IPR046341 -
Seca7g05853 826 MobiDBLite consensus disorder prediction 118 132 - -
Seca7g05853 826 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 -
Seca7g05853 826 CDD SET_SETDB-like 521 787 - -
Seca7g05853 826 ProSiteProfiles SET domain profile. 654 787 IPR001214 GO:0005515
Seca7g05853 826 ProSiteProfiles Pre-SET domain profile. 545 651 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g05853 826 MobiDBLite consensus disorder prediction 146 163 - -
Seca7g05853 826 SMART preset_2 497 638 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g05853 826 MobiDBLite consensus disorder prediction 115 226 - -
Seca7g05853 826 FunFam SET-domain containing protein lysine methyltransferase family protein 500 812 - -
Seca7g05853 826 Pfam SET domain 666 787 IPR001214 GO:0005515
Seca7g05853 826 MobiDBLite consensus disorder prediction 82 101 - -
Seca7g05853 826 SMART set_7 654 793 IPR001214 GO:0005515
Seca7g05853 826 Gene3D SET domain 482 796 IPR046341 -
Seca7g05853 826 Gene3D - 1 59 IPR043017 -
Seca7g05853 826 MobiDBLite consensus disorder prediction 399 428 - -
Seca7g05853 826 Pfam Pre-SET motif 501 646 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g05853 826 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05853 Seca-Chr7 158230265 158237177 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05853 499 810 Su(var)3-9 homologs AT1G73100 31.420 6.34e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca7g05853 Pre-SET 4.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05853 - - gmx:100778335 1184.47