Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05851 ATGGCACCCAATCCAAAAGTGGCAGCAGCCTATCGTGCAATGGCAAATCTTGGGATTTCTGAATCACAAGTGAAACCAGTATTAAAAAAACTCCTCAAATTGTATGATAAAAATTGGAAACTCATTGAGGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAGGATGATGAATATAAGGCTATAGCTGCTAAAATGTCTTCTGTCTTTTCAAACAATCAGGAAGAAGAGATGGAGGGTGAAGAAGCTCAGATGCATGTTGAACCCGTCCGACCTTTGAAAAGGTTGCGCTTAAGAGGCCAAGAGAGTCAGCCTTTGCATCCTCCAACTATCAATTCCCACGGCTCAGATGCCTCTCCTTTAAAAAAGCTTAGATCAGAAAACAACACATCCGCCGAGGGCTGTTCTAGAAAGCAGCCTCAAAGTCAAAACAAAGCTGTGTCATCTGATGGAAATGCGAGGATTGAAGCACGTCCGGTTCCATCACGAGATGATATTGTTGACAAAGGAAAGCAACCTGCATCACCCCAAGTTGCTCTTAGAGGGAGAAGACTTCTATCTGAAAGAACATCCCCATCAATACCATCAAAAGAACCAACAGTTGGACCAGGAAAGTTTCCATTGCCAAATGACCAATTGCCTCGTACTCATGCCTTGATCATACCCAAGGATGAGCCTATTGATGAATTGCCTGATTATGAGGTTCCCTTTGCAGTGATTCCTCCTGGTATTCAATGGACTATTTCTCAATGTCAAGTTTTAGGTTCACTTTTTCTTTTTCTAAATGTAGAACCATCAAGTTTAAGGAACTCATCAATGAATAATGGCATAAATGGAAAGCAAGATGGCCATGTCACTGTGCCATCATCGCAACGCAGAGATGAAGAAGCAATGTCTAATGTAGAGATTGCCACATCAACTTTGGGAGAAGTAAAACTTTCTCTTAGCTGTAACTCAAGTCTTTTGGGGCCAGATTTTCGTATGCCTAGTCAAGAGAAACTTATAAAAATGATGGTGGATAAATGTCTGCCATCATATAAAATCACCGACCCAAATTTTTCTGTCCCTAAACTTTTGAGGCTAATATGTGACTGCATGTTGGAATTCAGAACTGATTCAAATGATGACTCACAAGGAGGTTCTAGGACAAGATCAAGTGTTGATTTATTGAAGGAATCAGAGGCACATGACACACTGAGTGCTGGAAGAAATAAAGATCTGGACATGCTTCCTCACTCATCAAATGGACCAATCAATGTTATTAAGTCTTCTCCTACCTTGGTTTCACCCCACAGTCCCTTTTCTCTAGCCCACCTGACTGGTCAGGATGATGCTGTATCGGTTTCCAAGATGAACAAGACAAATGATTTTTCACGATGTGATGTCAGAAAAGACCCCGAGGATCCCATGGCTCCAAATTCCCGTAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATGTAAGGTCTTTTCATAATGCTGATGACCTTACAAAAGGAGAAAATGTTAAAGTTTCCTGGGTGAATGAATCTACTCACGATTTTCCACCATATTTTAACTACATACCCCAAAATCTTGTTTTCCAAAATGCTTGTGTTAGCGTTTCTCTATCCCGTATTGGGGTTGAGGACTGCTATGGTATTGGAAATTGTGTCTTGCAGTCTACACCCTGCACTTGTGCAAATAAAACGGGGGGTGAATTTGCATACACCGCACAAGGCCTACTGAAGGAAGAGTTTTTGGAAGAGTGCATTGCCATCAGTCGCCACCCTCAACAACATTACTTCTATTGCAATGATTGCCCACTTGAAAGATCTAAGAATGATGTTTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGTAAAGAATGTGGCAATCGGGTTACTCAGCGAGGAATAACTTGCAACTTGCAGGTATTTTTCACTTCAGAGGGGAAAGGATGGGGTCTTCGTACATTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCACCAAAGAGTTGCATGAAAGGAACATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTAGACGCAAATTGGGATTCAGGATTTGTTAAGGATGAAGAAGCTCTATGCTTGGATGCAGCATCCTTTGGCAACACTGCTAGGTTTATCAATCACAGATGTTTTGATTCAAACTTGGTTGAGATCCCCGTTGAAGTTGAGGGCCCAGATCATTACTACTATCATTTGGCTTTTTTCACTTCCAGAAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGTATTGACTTTGATGACCATGATCATCCTGTCAAGCTATTCCAGTGCAGATGTGGTAGTAAATTCTGCAGGAATATGAAGCGAACGAATAGATCCAGTAGATCTGCATCAATTGCAAGATGA 2472 0.4118 MAPNPKVAAAYRAMANLGISESQVKPVLKKLLKLYDKNWKLIEEENYRALADAIFEDDEYKAIAAKMSSVFSNNQEEEMEGEEAQMHVEPVRPLKRLRLRGQESQPLHPPTINSHGSDASPLKKLRSENNTSAEGCSRKQPQSQNKAVSSDGNARIEARPVPSRDDIVDKGKQPASPQVALRGRRLLSERTSPSIPSKEPTVGPGKFPLPNDQLPRTHALIIPKDEPIDELPDYEVPFAVIPPGIQWTISQCQVLGSLFLFLNVEPSSLRNSSMNNGINGKQDGHVTVPSSQRRDEEAMSNVEIATSTLGEVKLSLSCNSSLLGPDFRMPSQEKLIKMMVDKCLPSYKITDPNFSVPKLLRLICDCMLEFRTDSNDDSQGGSRTRSSVDLLKESEAHDTLSAGRNKDLDMLPHSSNGPINVIKSSPTLVSPHSPFSLAHLTGQDDAVSVSKMNKTNDFSRCDVRKDPEDPMAPNSRSLVVVPQHQLTADDVRSFHNADDLTKGENVKVSWVNESTHDFPPYFNYIPQNLVFQNACVSVSLSRIGVEDCYGIGNCVLQSTPCTCANKTGGEFAYTAQGLLKEEFLEECIAISRHPQQHYFYCNDCPLERSKNDVCLEPCKGHLKRKFIKECWSKCGCGKECGNRVTQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTTKELHERNMKCTENGKYTYPVLLDANWDSGFVKDEEALCLDAASFGNTARFINHRCFDSNLVEIPVEVEGPDHYYYHLAFFTSRKIAAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRTNRSSRSASIAR. 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05851 823 Gene3D - 1 59 IPR043017 -
Seca7g05851 823 SMART preset_2 496 635 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g05851 823 MobiDBLite consensus disorder prediction 374 412 - -
Seca7g05851 823 MobiDBLite consensus disorder prediction 388 404 - -
Seca7g05851 823 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 -
Seca7g05851 823 MobiDBLite consensus disorder prediction 273 287 - -
Seca7g05851 823 CDD SET_SETDB-like 520 784 - -
Seca7g05851 823 MobiDBLite consensus disorder prediction 106 151 - -
Seca7g05851 823 Pfam Pre-SET motif 503 643 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g05851 823 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 818 - -
Seca7g05851 823 SMART set_7 651 790 IPR001214 GO:0005515
Seca7g05851 823 MobiDBLite consensus disorder prediction 103 213 - -
Seca7g05851 823 Pfam SET domain 663 784 IPR001214 GO:0005515
Seca7g05851 823 MobiDBLite consensus disorder prediction 273 295 - -
Seca7g05851 823 ProSiteProfiles SET domain profile. 651 784 IPR001214 GO:0005515
Seca7g05851 823 Gene3D SET domain 498 809 IPR046341 -
Seca7g05851 823 SUPERFAMILY SET domain 506 807 IPR046341 -
Seca7g05851 823 ProSiteProfiles Pre-SET domain profile. 553 648 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g05851 823 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 823 IPR025776 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05851 Seca-Chr7 158215305 158222076 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05851 627 809 C2H2 Transcription Factor Family AT2G23740 40.741 8.17e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca7g05851 Pre-SET 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05851 - - gmx:100778335 1120.92