Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05843 ATGTCAACGGTGTCTAAAGATGATAACTTGGCCCTCTCTTCTGAGGATTCTTCGTCCCCAGATGACTCTGATCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCACACTGCTCCTCATGCAAAGTCTCACCACCATGCTCCTTATGCTAGAATATTCACCGCTAAGGATTTTCCTTCTTCAGCACCTTCACCTTCCAACGCCACTGCTGGGACCAAAAGGGCTGCTGATTCTCTTGTCGCTAGTAACCGTCCCAGTCAAGTGGTTGGATGGCCTCCCCTTCGAACATATAGAATGAATAGCTTTAATAGCCATGCAAAATCATCTGAAGCATTCAACTCTATGGATGAGAAGAGTAAGAGCAATAATACTGTTGCAAGGAAGAGTACTGACAATGGCAATGATAATAACAACCCTGATATCAAAGAGAAAAGACAGCTCAGGAGTTCCCCGTTTGTCAAGGTAAATATGGATGGGATACCAATTGGAAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCTCAAACATTGGAGGATATGTTTAACGAATCAACTACAGCTATCTCATGCAAAGGATCAAATGGGGAGGATCATGGCATAATTATAGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTGGTTGGAGATGTTCCTTGGGGGTAA 723 0.4329 MSTVSKDDNLALSSEDSSSPDDSDLELGLGLSLSHTAPHAKSHHHAPYARIFTAKDFPSSAPSPSNATAGTKRAADSLVASNRPSQVVGWPPLRTYRMNSFNSHAKSSEAFNSMDEKSKSNNTVARKSTDNGNDNNNPDIKEKRQLRSSPFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTAISCKGSNGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWG. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05843 240 Gene3D - 144 240 - -
Seca7g05843 240 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 239 IPR003311 GO:0005634|GO:0006355
Seca7g05843 240 MobiDBLite consensus disorder prediction 55 91 - -
Seca7g05843 240 MobiDBLite consensus disorder prediction 108 135 - -
Seca7g05843 240 SUPERFAMILY CAD & PB1 domains 146 239 - -
Seca7g05843 240 MobiDBLite consensus disorder prediction 1 18 - -
Seca7g05843 240 Pfam AUX/IAA family 30 239 IPR033389 -
Seca7g05843 240 ProSiteProfiles PB1 domain profile. 149 240 IPR000270 GO:0005515
Seca7g05843 240 MobiDBLite consensus disorder prediction 1 28 - -
Seca7g05843 240 MobiDBLite consensus disorder prediction 58 72 - -
Seca7g05843 240 MobiDBLite consensus disorder prediction 108 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05843 Seca-Chr7 158079514 158084478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05843 137 239 B3 DNA Binding Superfamily AT1G59750 34.951 9.00e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g05843 AUX_IAA 8.1e-48 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05843 K14484 - gmx:100527033 344.739