Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05837 ATGGATGTCACACGAGTTTTCGATAAAATCTTAGCTTCAACTTCTTCTTCTTCTTCAGGATCGTATAATATATTTTTGAACACGATCCTAGGATTGCCTGTGTTGGAACTTGCGGCAATATGTGTGAACCTGACCCTTGTTTTGTTGTTTCTCTTGGTTGCCTCCGTGAAACGGATTCTTGTGTATGAGGGTCGATTTGTAAAGGACAGCACCACAGGCAATGCCAGCCCAATTTGCAGTGTTATTGATAGAGAAACACATGATGTTCGAATCGGTGTAGTGTTCAAGTTGTCAGTGTTGTCTTGTTTTTATGTTCTGTTTGTGCAAGTTTTGGTGTTGGGGTTTGATGGGGGTGGTTTGATTTGGGGTGGGGCTAATGGGAAGCCTGTGGACTGGTCTCTTCTTTTTGTGCCAGCTTCACAGGGTTTAGCTTGGTTTGTGTTGAGCTTTTCTGCTTTGTATTGCAAATTCAAGGAGTCAGAGAAGTTTCCATTTTTGTTGAGAGTTTGGTGGTTTTTGTCATTTGTTATTTGCTTGTGTGATTTATATGTTGATGGGAGAGGATTTTGGGTGGAAGGTTCCAAGTACCTCTCTTCTCATGTTGTTGCAAATTTTGCTGTCACACCAGCTCTTGCCTTTTTGTGTGTAGTTGCAATTAGGGGTGTTACTGGTATACAAGTTTGTGGAAACCCTGATCTTCAAGAGCCATTACTTGTTGAAGAAGAACCAGGGTGTCTCAAGGTTACTCCTTATAGAGATGCTGGACTTTTTAGCTTGGCTACTCTTTCTTGGCTGAATCCACTTCTTTCCATTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTGTTGCACCAAAAGATCGAGCCAAGACAAGTTACAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATCCCTCTAAGCAGCCTTCATTAGCTTGGGCAATTCTCAAGTCATTCTGGAGAGAAGCAGCTCTGAATGCCATATTTGCTGGTGTGAATACTTTGGTGTCATATGTAGGTCCATACATGATAAGTGACTTTGTTGATTACTTGGGTGGAAAAGAAACTTACCCTCATGAAGGATATATCCTTGCGGGTATATTCTTTGTGGCAAAGCTTGTGGAGACCCTAACAACTAGGCAATGGTATCTAGGAGTAGACATTTTGGGTATGCATGTCAGGTCAGCTCTAACTGCAATGGTATATAGAAAGGGACTCAGATTATCAAGCTTGGCCAAGCAAAGTCATACTAGTGGAGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGAGTAGGGGACTACTCTTGGTACCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCACTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCTACATTGATTGCTACAATAATTTCCATTGTTGCCACTGTTCCTGTGGCTAGGATACAAGAAGATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGTCTGAGGAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGATAGATACAGAATAAAATTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTCAAGAAAGCACTTTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTTACTTTTGCTACTTCCATATTGTTAGGAGGTCAGCTGACTGCAGGTGGTGTTCTATCTGCTCTAGCTACTTTCAGGATTCTCCAAGAACCTCTGAGAAATTTTCCTGACTTGGTATCAACCATGGCTCAGACAAAGGTTTCTCTTGATCGCATATCTGGTTTCCTGCAGGATGAAGAGTTGCAGGAAGATGCAACTATTGACTTGCCACATGGCATGTCTAACAATGCTGTAGAAATTGAGGATGGTGTCTTCTCCTGGGACCCTTCTTTGTGTAGGCCTACTCTATCAGGAATACATATGAAAGTGGAAAGGGGGATGACTGTGGCTGTTTGTGGTGTGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGGGTGTGTGGTTCTGCTGCATATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAACATCCTGTTTGGAAACCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAAGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGATAGAGGTATAAACTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTTGCAAGAGCACTCTACCAAGATGCAGATATTTATCTTCTTGATGATCCTTTTAGTGCAGTTGATGCCCACACTGGATCAGAATTATTCAGAGAGTATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTACTGATATGATACTGGTTCTTAAAGAAGGTCACATCATACAAGCAGGAAAGTATGATGATCTTTTACAGGCAGGAACAGATTTTAGAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTACTCACTCAGAAGATTCAGATGAAAATGTGACCTTGGATGCATCTGTTTTAACCAGTAAGACATCAATTTCTTCTGCAAATGATATTGACAGTTTGGCAAAGGAAGTTCAAGAAGGATCATCTGATCAGAAAGCAATTAAGGAGAAGAAGAAGAAAGCAAAACGCTCAAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTACTTGTCCTACATGGCTGCAGCATATAAAGGCTTGTTGATTCCCCTTATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACCAACCCAAAGTAACTCCCACGGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGTTCATGGTTCATATTTGTAAGGGCCGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAACTATTTTACAACATGCTGAGAAGTATTTTCCGTGCACCAATGTCTTTCTTTGATTCTACACCAGCTGGAAGGATCTTGAATCGGGTTTCAATTGATCAAAGTGTGGTGGATCTTGACATTCCTTTTAGATTAGGAGGGTTTGCTTCATCAACAATACAGCTTATTGGCATTGTTGGTGTAATGACAGAAGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCAATTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTGCGCATTGTAAGCATCCAGAAATCTCCAGTTATACAACTTTTTAGTGAATCAATTGCTGGAGCAGCCACCATAAGAGGCTTTGGGCAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTCTGCAGTCTCGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTATTCGCTTTCTGCATGGTATTACTTGTGAGCTTTCCCCGTGGAAGTATTGATCCTAGCATGGCTGGGCTTGCTGTGACGTATGGCCTGAATTTAAATGGACGTCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAAAGAATTTATCAGTACAGCCAAATTCCTGGTGAAGCGCCTGCAATTATTGAAGATTCTCACCCTCCATCGTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGATGTCTAAATCAAGCTTTAGCAATGTGCCATGCATCAAATTCTTTATTATGATTTTTCTACTGCAATTGGCTCTTTCTCATGATGATGTGCCTCATATTCCCCCTACTCTGTCTCTTTTAAAGGTCCGTTACAAGGAAAATCTTCCTTTGGTACTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGCAAAACTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGCATCTGGGAGTATCCTTATAGACAACATTAATATTTCAGGGATTGGCCTTCATGACCTTCGAAGCCATCTCAGTATCATACCGCAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCCCTTGAAGAGCACTCTGATAAAGAGATTTGGGAGGCATTAGATAAGTCTCAGCTTGGAGAGATCATCCGTGAGAAAGGGCAAAAGCTTGATACGCCAGGTAGCTATCTCAAGATTTATTTCAAATGTACAGTGCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGGCAACTGGTTTCTCTTGGCCGAGCTCTTCTTAAACAATCAAAGATACTTGTACTTGATGAAGCAACGGCATCTGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGAAAAGAGTTTAGAGACTGCACTGTGTGCACTATTGCACATCGTATTCCTACTGTCATTGACAGTGATCTAGTTCTCGTACTCAGTGATGGTCGAGTTGTGGAGTTTGACACTCCATCACGGCTATTAGAGGATAAGTCATCCATGTTTCTGAAGTTGGTCACTGAATATTCATCGCGATCAAGTGGCATACCGGATTTATAA 4755 0.4147 MDVTRVFDKILASTSSSSSGSYNIFLNTILGLPVLELAAICVNLTLVLLFLLVASVKRILVYEGRFVKDSTTGNASPICSVIDRETHDVRIGVVFKLSVLSCFYVLFVQVLVLGFDGGGLIWGGANGKPVDWSLLFVPASQGLAWFVLSFSALYCKFKESEKFPFLLRVWWFLSFVICLCDLYVDGRGFWVEGSKYLSSHVVANFAVTPALAFLCVVAIRGVTGIQVCGNPDLQEPLLVEEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPKDRAKTSYKVLNSNWERLKAENPSKQPSLAWAILKSFWREAALNAIFAGVNTLVSYVGPYMISDFVDYLGGKETYPHEGYILAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLIATIISIVATVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLKKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDEELQEDATIDLPHGMSNNAVEIEDGVFSWDPSLCRPTLSGIHMKVERGMTVAVCGVVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVTHQVEFLPATDMILVLKEGHIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPTHSEDSDENVTLDASVLTSKTSISSANDIDSLAKEVQEGSSDQKAIKEKKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFYNMLRSIFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVGVMTEVTWQVLLLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPVIQLFSESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPGEAPAIIEDSHPPSSWPENGTIQLIDLKMSKSSFSNVPCIKFFIMIFLLQLALSHDDVPHIPPTLSLLKVRYKENLPLVLHGVSCTFPGGKKIGIVGRTGSGKTTLIQALFRLVEPASGSILIDNINISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIREKGQKLDTPGSYLKIYFKCTVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRKEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVVEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDL. 1585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05837 1584 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 252 1575 - -
Seca7g05837 1584 CDD ABCC_MRP_domain2 1332 1556 - -
Seca7g05837 1584 FunFam ABC transporter C family member 5 930 1267 - -
Seca7g05837 1584 Pfam ABC transporter 1344 1503 IPR003439 GO:0005524
Seca7g05837 1584 SUPERFAMILY ABC transporter transmembrane region 318 628 IPR036640 GO:0005524|GO:0016020
Seca7g05837 1584 SUPERFAMILY ABC transporter transmembrane region 966 1266 IPR036640 GO:0005524|GO:0016020
Seca7g05837 1584 Gene3D - 637 871 IPR027417 -
Seca7g05837 1584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1329 1572 IPR003439 GO:0005524
Seca7g05837 1584 CDD ABCC_MRP_domain1 643 842 - -
Seca7g05837 1584 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524|GO:0016887
Seca7g05837 1584 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 969 1239 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g05837 1584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 866 IPR003439 GO:0005524
Seca7g05837 1584 Pfam ABC transporter transmembrane region 332 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g05837 1584 Pfam ABC transporter transmembrane region 969 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g05837 1584 FunFam ABC transporter C family member 5 628 875 - -
Seca7g05837 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1333 1568 IPR027417 -
Seca7g05837 1584 Pfam ABC transporter 661 795 IPR003439 GO:0005524
Seca7g05837 1584 FunFam ABC transporter C family member 3 1324 1573 - -
Seca7g05837 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 865 IPR027417 -
Seca7g05837 1584 SMART AAA_5 1353 1549 IPR003593 GO:0016887
Seca7g05837 1584 SMART AAA_5 670 851 IPR003593 GO:0016887
Seca7g05837 1584 MobiDBLite consensus disorder prediction 917 937 - -
Seca7g05837 1584 Gene3D ABC transporter type 1, transmembrane domain 928 1266 IPR036640 GO:0005524|GO:0016020
Seca7g05837 1584 Gene3D ABC transporter type 1, transmembrane domain 299 626 IPR036640 GO:0005524|GO:0016020
Seca7g05837 1584 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 609 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g05837 1584 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Seca7g05837 1584 CDD ABC_6TM_ABCC_D2 967 1261 IPR044726 GO:0140359
Seca7g05837 1584 Gene3D - 1328 1574 IPR027417 -
Seca7g05837 1584 FunFam ABC transporter C family member 10 312 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05837 Seca-Chr7 158044423 158053243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05837 643 859 Calmodulin-binding Proteins AT2G36910 31.780 1.41e-19 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05837 - - gmx:100781010 2670.57