Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05758 ATGGCGCTATGGATGGAAAAGGGTTCCGAGCCCTTGACCGAAACCGAGAAAGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTGCAGCCATTGAACTTAAGGAAAAGGGTAACCAATATGTTAAGATGGGTAAGAAGCATTACACTGATGCCATTAATTGCTACACAAGGGCAATCAATCAGAAAGCCTTGAGTGACTCTGAGAACTCTATTATTTTTGCAAATAGAGCCCATGTCAATTTGCTGCTAGGAAATCTTAGACGTGCTCTCACAGATGCTCAAGAGGCAATAAAGTTGTGCCCCTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTCTTTCACTGAATTTGTTGGCTGAAGCAAAAGAGCATTGTCAAAAGGGTCTTCAGTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGATCTGCAGATTGGTCTAAAGATATCAGAGAATGAAAAGCATGAGGCTGAAGTCTCCAAGGCTGTTGCAGAGGCAAAGGAACTTGTGTCTGCAATAGAATCTAGAGGCTTGAAGATTGGAAAGGCAATGTATCGAGAACTAACTGGATTAAGAAAGCCTGTGTTAGATAAAAATAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTCTGTTCACCTTGATATGGTATTTGCAGAAGATCAGCCACTACCATGGGATGTTGAAAACAATTACAAACGCGAATTTATTGAATTATACTATGAGGCTGGTTCTGGACTTCATCTATCTAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTTCTGATGAGGTAGGTGTTGGTGATGAAGAGAAAGATGCAGCTGAGGATCTTAAGCAAAAGATGGACATCTTTCCTGTTACATGCTTGTGA 945 0.4095 MALWMEKGSEPLTETEKADLEAIAAIKESAAIELKEKGNQYVKMGKKHYTDAINCYTRAINQKALSDSENSIIFANRAHVNLLLGNLRRALTDAQEAIKLCPSNIKAIYRAAKASLSLNLLAEAKEHCQKGLQLDPNNEELKKLDLQIGLKISENEKHEAEVSKAVAEAKELVSAIESRGLKIGKAMYRELTGLRKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMVFAEDQPLPWDVENNYKREFIELYYEAGSGLHLSKEKLLHCLLEGTAASDEVGVGDEEKDAAEDLKQKMDIFPVTCL. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05758 314 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Seca7g05758 314 CDD CTWD_Cns1-like 170 277 - -
Seca7g05758 314 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 281 - -
Seca7g05758 314 SMART tpr_5 71 104 IPR019734 GO:0005515
Seca7g05758 314 SMART tpr_5 105 138 IPR019734 GO:0005515
Seca7g05758 314 SMART tpr_5 31 66 IPR019734 GO:0005515
Seca7g05758 314 Gene3D Tetratricopeptide repeat domain 24 180 IPR011990 GO:0005515
Seca7g05758 314 Pfam Cns1/TTC4 Wheel domain 200 267 IPR044059 GO:0051879
Seca7g05758 314 SUPERFAMILY TPR-like 22 157 IPR011990 GO:0005515
Seca7g05758 314 Coils Coil 150 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05758 Seca-Chr7 156992151 156997450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05758 30 160 Calmodulin-binding Proteins AT3G25230 33.099 8.52e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05758 K24927 - gmx:100783179 503.827