Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05757 ATGGCTACTCGAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCATGGGAACCCAACAAGCCATTAACCATCGAGGACGTTGAGGTGGCTCTGCCACAGGCTGGAGAGGTTCGAGTCCAAATTTTCTACACTGCTCTCTGTCACACCGATGCTTATACTTGGAGCGGCAAGGATCCAGAAGGTCTCTTCCCATGTATACTTGGTCATGAGGCTGCAGGGATTGTGGAAAGTGTTGGAGAAGGTGTTACTGAAGTTCAGCCTGGTGATCATGTCATCCCTTGTTACCAGGCTGAATGTGGAGAGTGCAAGTTTTGCAAATCAGGAAAAACCAATCTCTGTGGCAAAATTCGTGCTGCCACTGGAGTTGGGGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCTATCAATGGAAAGCCAATCTATCATTTTATGGGAACCTCCACATTTAGTCAATATACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCCAAAGCTCCTTTGGAGAAAGTCTGTCTTCTTGGATGCGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAAGCAGGGTCAATTGTTGCTGTTTTCGGTCTTGGAACTGTTGGGCTTGCCGTTGCAGAGGGTGCAAAAGCTGCTGGGGCATCACGGATAATTGGCATAGATGTTGATAGCAACAAGTTTGAAAGAGCAAAGAACTTTGGTGTCACTGAGTTTATTAATCCAAGTGAACATGAGAAACCAATTCAGCAGGTAATAGTTGATCTAACAGATGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGGGCTGCTTTGGAATGCTGCCATAAGGTGAGTGCTGCTGCTAGCTCAGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACTCGACCTTTCCAGTTGGTGACTGGGCGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGCTCACAAGTGCCTTGGCTTGTAGACAAGTACTTGAACAAGGAAATCAAGGTTGATGAGTACATCACTCACAGTTTGACTCTTGCAGAGATCAACAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTGCAATGCATGTGTGA 1161 0.4703 MATRGQVITCKAAVAWEPNKPLTIEDVEVALPQAGEVRVQIFYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECGECKFCKSGKTNLCGKIRAATGVGVMLSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDVDSNKFERAKNFGVTEFINPSEHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKVSAAASSGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSSSQVPWLVDKYLNKEIKVDEYITHSLTLAEINKAFDLMHEGGCLRCVLAMHV. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05757 386 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Seca7g05757 386 PANTHER ALCOHOL DEHYDROGENASE 5 382 - -
Seca7g05757 386 SUPERFAMILY GroES-like 334 382 IPR011032 -
Seca7g05757 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Seca7g05757 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 347 IPR036291 -
Seca7g05757 386 Gene3D - 13 379 - -
Seca7g05757 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 327 - -
Seca7g05757 386 CDD alcohol_DH_class_III 8 382 IPR014183 GO:0006069|GO:0008270|GO:0051903
Seca7g05757 386 Gene3D - 182 327 - -
Seca7g05757 386 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 384 IPR014183 GO:0006069|GO:0008270|GO:0051903
Seca7g05757 386 Pfam Zinc-binding dehydrogenase 206 334 IPR013149 -
Seca7g05757 386 SUPERFAMILY GroES-like 3 198 IPR011032 -
Seca7g05757 386 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05757 Seca-Chr7 156988965 156991825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05757 10 338 Monolignol Biosynthesis Gene Families AT1G72680 25.970 5.42e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05757 K00121 - gmx:100793008 715.301