Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05730 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGACGAAGATGAAGAATATCCAATACACAACTCAAAGAAACCTTCCATGCAAAACGACGAGATCATGGAACTATTATGGCAAAACGGTCAGGTCGTGATGCAAAGCCAAAACCAACGACCATTCAGAAAACCTCCACCGCCGGCCATCAACACCGGCGACGGCATGATTCCGGCGAGGGAGATTCCATCCTCAGAAGCACCAGAAAACTACAGTAACCAACACCTGTTCATGCAAGAAGACGAAATGGCTTCCTGGCTTCACGATTCAATCCACGAAGATCCTTCCTTCGATCATAACGATTTCTGCGCCGACATCCTCTGCCGTCCCCCGCCTCCGCCTCCGCCGCCCGGTCAGAATCACAACAGTGCCATGCAAGCTCTCGTCCGGCAGCCTCCGAGGCCGCCGGCACCTCGACCTCCGATTCCGCCGGCGAGGAGGCTGGAGCAGACGCCGAGTAGGATTCACAATTTCGCTCACTTCTCCAAGCTCAACAATGCTAGGGTTGAACCAGGGCCGTCGTCGAGTTCCAAGGCCACGGCGGTGCGGGAATCGACGGTAGTGGATTCGTGCGAAACGCCGATCACAGCGGCTGCAAAGGCGGCTGCGGCTTCCAAGCTCTCGGAGACTGTCAGGAGCTCCGCAGATACCGGCCGTGGGAGCATGAGCGCCGCCGGGAAATCGGCGTCGGCCGGCGGAAGAGAAACGGCGACGTATGACATGACAGTGACGTCATCACCTGGCGGTTCGAGCGGGAGTGCTGAACCAGGTCAGAGGGAACCGGGAGTGGACCGGAAGAGGAAGGGCCGGGAACCGGAGGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCGGAGGCAAAAAAACAAACCCGTGGTTCTACATCTACAAAGAGGTCTCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGGTGTAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTAAAGTCACTGCAATTACAAGTCCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAGTCCAGCAGTATATGCCGCCAATGGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGGCCAGTAATGCCATTTCCCAATATGTTAACTAATTCGGCTTTGCCAACAGCAAGTGCAGCTGCTCATTTGGGACCACGGTTCCCTATGCCTCCTTTCCATATACCCCATGTTCCTACACCTGATTCATCTAGAATGCAAGCAGCAAATCAGTCAGATAATATGCTTAATTCACTTGGTACACTGGCTCCAGATCAATCACGTATCCCCAACTTCACTGATCCTTATCAGCAATACCTAAGTTCCCACCAGGTGCAGCAGTTACAGTTAATGCAGGCAATGAACCAACAAAATGTCAGCAAGCCAAGTACTAGTAGGGGCCAAGAGAATCCACAAAAACATCAGTCAGAAGAAACATGA 1578 0.5133 MNHCVPDFEIQMDEDEEYPIHNSKKPSMQNDEIMELLWQNGQVVMQSQNQRPFRKPPPPAINTGDGMIPAREIPSSEAPENYSNQHLFMQEDEMASWLHDSIHEDPSFDHNDFCADILCRPPPPPPPPGQNHNSAMQALVRQPPRPPAPRPPIPPARRLEQTPSRIHNFAHFSKLNNARVEPGPSSSSKATAVRESTVVDSCETPITAAAKAAAASKLSETVRSSADTGRGSMSAAGKSASAGGRETATYDMTVTSSPGGSSGSAEPGQREPGVDRKRKGREPEESEFQSEDVDFESPEAKKQTRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGVQQYMPPMGMGIGMGMGMEMGMNRPVMPFPNMLTNSALPTASAAAHLGPRFPMPPFHIPHVPTPDSSRMQAANQSDNMLNSLGTLAPDQSRIPNFTDPYQQYLSSHQVQQLQLMQAMNQQNVSKPSTSRGQENPQKHQSEET. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05730 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Seca7g05730 525 MobiDBLite consensus disorder prediction 270 286 - -
Seca7g05730 525 Gene3D - 309 372 IPR036638 GO:0046983
Seca7g05730 525 PANTHER TRANSCRIPTION FACTOR PIF3 20 502 IPR044273 GO:0003700|GO:0006355
Seca7g05730 525 MobiDBLite consensus disorder prediction 140 160 - -
Seca7g05730 525 SMART finulus 320 369 IPR011598 GO:0046983
Seca7g05730 525 MobiDBLite consensus disorder prediction 142 158 - -
Seca7g05730 525 FunFam Basic helix-loop-helix transcription factor 309 372 - -
Seca7g05730 525 Pfam Helix-loop-helix DNA-binding domain 318 364 IPR011598 GO:0046983
Seca7g05730 525 MobiDBLite consensus disorder prediction 223 322 - -
Seca7g05730 525 MobiDBLite consensus disorder prediction 498 516 - -
Seca7g05730 525 CDD bHLH_AtPIF_like 314 377 IPR047265 -
Seca7g05730 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 392 IPR036638 GO:0046983
Seca7g05730 525 MobiDBLite consensus disorder prediction 179 197 - -
Seca7g05730 525 MobiDBLite consensus disorder prediction 246 264 - -
Seca7g05730 525 MobiDBLite consensus disorder prediction 498 525 - -
Seca7g05730 525 MobiDBLite consensus disorder prediction 49 78 - -
Seca7g05730 525 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05730 Seca-Chr7 156611604 156616906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05730 1 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.041 1.63e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g05730 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05730 - - gmx:100788491 667.151