Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05718 ATGGCGGCATCGCGGCGGCTCCGGGAGCTGCAATCGCAACCGGGGAACAAGATCTGCGTCGATTGCTCCCAGAAGAACCCGCAATGGGCGTCGGTGTCGTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGAGGCAATGATAACCTCAATGCCTTCCTCGCTCGCTATTCAATTCCCAAGGAAACCGACATCGTCACCAAGTACAACACCAACGCCGCCGCCGTTTACCGTGACCGGATCCAGGCCATCGCCGAGGGACGTCCCTGGCGCGATCCGCCTGTCGTCAAGGAGAATCTATCCTCCGCCGGCAAGGGGAAGCCGCCGCTGACGCAGACTCGCCGGAATAATGATTCCGGCTGGGACGATTGGGGTAATGATGGCGGTGTCGATATCAGGAGCAAGTCGACCGGGGACTTCAGGAACTTGAACGGTGGCAACGGCGGAGCGCCGGCGAGGTCGAGGTCGACGGAGGATATATATACGCGGTCACAGCTGGAGGCTTCCGCGGCGAACAAGGAGAGCTTCTTCGCGAGGAAGATGGTGGAGAATGAGTCGCGACCCGAAGGGGTTCCGCCGTCACAGGGTGGGAAGTACGTTGGATTCGGATCGAGCCCCGCGCCTTCGCAGAGGAGCAATCCGCAAAACAACTATTTCTCTGTCGTTTCTCAGGGGATTGGTAAATTGTCATTGGTTGCTGCCTCTGCGGCTCATTCTGCTGCTAATGTTGTTCAGGCTGGCACAAAAGATATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACTGTCAATGTTGTCACTCAAAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGTGTCATGGCTTTGGCTTCACAGAAGGTTGAAGAGTACACCCGAGATAACCCAAATTGGAAGGCGGATAACTGGCAACAGAACGAGAATGGTAGAAATGGTTACTATCAGGATTTCAATCAAGAGAACAAAGGCTGGAATTCTTCTACCGGAAGAGAACAATCTTCATCAGGGCAATTTAAAACTCATACCTCAAGCTCTTGGGACGATTGGGACCAGAAAGATAGTAGGAAAGAGGAACCAACTAAAGGATCAACTCATTCATCTGCTGGGCAGTTTGGTACTTACAATTCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCACCTAAAGGATCGGCTCCCCATAATAATGATGGTGGTTGGGCTGGCTGGGATAATGCCAAAGAAGATGGATTTGATAATTTTTATGAAGGTGCATCTAACAAGAAAGCTGTTGGTCATAATGGAAAATCAGATGCCTCTTGGACAGGGGGAGGCTTTCTCTAA 1455 0.5175 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAAAVYRDRIQAIAEGRPWRDPPVVKENLSSAGKGKPPLTQTRRNNDSGWDDWGNDGGVDIRSKSTGDFRNLNGGNGGAPARSRSTEDIYTRSQLEASAANKESFFARKMVENESRPEGVPPSQGGKYVGFGSSPAPSQRSNPQNNYFSVVSQGIGKLSLVAASAAHSAANVVQAGTKDITSKVKEGGYDQKVNETVNVVTQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNWKADNWQQNENGRNGYYQDFNQENKGWNSSTGREQSSSGQFKTHTSSSWDDWDQKDSRKEEPTKGSTHSSAGQFGTYNSSSWDDWDHKDSRKEEPPKGSAPHNNDGGWAGWDNAKEDGFDNFYEGASNKKAVGHNGKSDASWTGGGFL. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05718 484 MobiDBLite consensus disorder prediction 384 401 - -
Seca7g05718 484 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Seca7g05718 484 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Seca7g05718 484 MobiDBLite consensus disorder prediction 213 246 - -
Seca7g05718 484 MobiDBLite consensus disorder prediction 402 417 - -
Seca7g05718 484 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Seca7g05718 484 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Seca7g05718 484 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Seca7g05718 484 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Seca7g05718 484 MobiDBLite consensus disorder prediction 334 484 - -
Seca7g05718 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Seca7g05718 484 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Seca7g05718 484 MobiDBLite consensus disorder prediction 418 435 - -
Seca7g05718 484 CDD ArfGap_ArfGap1 3 117 - -
Seca7g05718 484 MobiDBLite consensus disorder prediction 135 149 - -
Seca7g05718 484 MobiDBLite consensus disorder prediction 122 187 - -
Seca7g05718 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 405 IPR044519 GO:0005096|GO:0016192
Seca7g05718 484 MobiDBLite consensus disorder prediction 336 383 - -
Seca7g05718 484 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05718 Seca-Chr7 156351045 156354644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05718 5 83 C2H2 Transcription Factor Family AT4G05330 51.250 2.04e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05718 K12492 - gmx:100806519 825.469