Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05712 ATGGGAGAAGAAGCGGTTTGTGTGCAACCATTGGTAGATACAAGAAGGGAAGACAATGAGGAATCAAGGACAGAACTAAAGCGGGACTACCACCAATGTGTTGCTGATACTGAGCCTGACCTTTCACCAAATAAGAAACAAGCAAAAGAAGTTTCAAACGATGAAGTGCGCTCTGAGGTTACCAACCCCAACATTTCTGCAGCAGAGCACGCTCTTACTTTTCAAGATATCAGTAGCCAACCGACTGAATCTGCGAATGTCAACCACGCAGAGTGTGGGGAACTAACTTCTACTTGTTTGGAGAATTCGTGTTCTGATGAGACATTGAGTGATGAAGCCGGTGATCAGCATAATAATAATGATAATGATAATAATAATAACAATAACACATCTCAGAATGATAAGGACACAAGTAGCGCTGCAGTGACGTCCCGTGTTGTTCTGGAAATTCCAAAGCATGCTAGTTCGACTGGAATCAGAAAGATTACTTTTAAGTTTAGTAAAAAGAAGGAGGACTATGAGTATCAACCACCTGCTCCTATGCACCTCCCTGCCCTCTATACTGATGGCAATGGCTATAGCTTTCATGGGTATGATGAAGAATATTTGGCAAAAGATGAGAGCTCATATGGAATGGCATATGTTCGTGATGGAGATTTGGAGATGTACACTCGCAACATGGAATTGAAAATGTCAAAGAAAGTAGTCCCCAATTGCTACCCCACAAATGTCAAAAAGCTGTTATCAACTGGTATCCTTGATGGAGCTGTAGTGAAATATATTTACAACCCCGGAAAGGTTGAACTCCGGGGGATTATTGATGGTGGTGGATATTTGTGTGGCTGTTCAGTGTGCAATTACTCCAGAGTGCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGTGCCAAGACTAGACATCCAAATAATCATATATTCCTAGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGCATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAACGAGGGAACATTCCAGGTTTGGAAAGAAAATCTTCTACAAAGCAACGGGAGGGTTCAGGCTCATAAGAATTATAATACCAAGTTTATTGGCATGCCTCATACAAAAACCAGTCAATCAATTGAAAGTGCGAGCCACTTGTCGTCTTTGCATGTGCCAAGTCCTTTTGAGCAGCAAATGTATGTGAATCAGACGACTGATGAGTGGAAACGTGTGGTGAAGAAGCCAAGCTCCTGCACTTCTAACTCAGGTGTACCGCTGAAGAGAAATGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTGCATAGGTTACTTTTTATGCCTAATGGACTACCGGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGTTGTTGTGACATAGAGATAAGCCCTTCTCAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTATCGCCACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTGTCTTTGGCAAATGGTCAAAATCTTATGACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCTAGGGCCTTTCATGCATCCTGCTTGGGTTTACAGTGTGTTCCAGATAATAGTTGGCGTTGTCTAAATTGTAGAGATAATGGTAATGGAAGAGAATCTTCCATTTCAAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGACTATGAAATGGGCGGATGTGTTGTTTGCAGGGAGCATGATTTCAGTGTTGCTAAATTTGATGAGCGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCACGTAGGTTGCTTGCGGGAGATTGGGCTGTGTGAGCTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGAGGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGAAATTATACCATCTTCCTTGTCTGAACTAATAATCAGGAAGCACGAGGAGAGGGGATTATGTACTTATGGAGGCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCCGAACATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTATATGGGAGAAATATTTCTGGTCAAGAATTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCCATTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCTCTGGTAGCTACAAGCAGAGAACATCAAGGAAAAGGTTATTTTCAAGTGTTATTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCTGAATCAATTTGGACTAAGAAATTAGGCTTCCGTAAGATGAGTGAAGATCAGTTATCCAAATATCTTAGAGAGGTGCAGCTCACCTTATTCAACAAAACTTCAGTGCTGGAGAAAACAGTGCAGCTGGCGACAGAATGA 2661 0.4171 MGEEAVCVQPLVDTRREDNEESRTELKRDYHQCVADTEPDLSPNKKQAKEVSNDEVRSEVTNPNISAAEHALTFQDISSQPTESANVNHAECGELTSTCLENSCSDETLSDEAGDQHNNNDNDNNNNNNTSQNDKDTSSAAVTSRVVLEIPKHASSTGIRKITFKFSKKKEDYEYQPPAPMHLPALYTDGNGYSFHGYDEEYLAKDESSYGMAYVRDGDLEMYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELRGIIDGGGYLCGCSVCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEGTFQVWKENLLQSNGRVQAHKNYNTKFIGMPHTKTSQSIESASHLSSLHVPSPFEQQMYVNQTTDEWKRVVKKPSSCTSNSGVPLKRNADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLMTGDSDDMCAICGDGGDLILCNGCPRAFHASCLGLQCVPDNSWRCLNCRDNGNGRESSISRPIMIRLTRVDKTPDYEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLREIGLCELEELPKDKWFCCEDCNRIYVALQNSVSAGAEIIPSSLSELIIRKHEERGLCTYGGMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNVAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLREVQLTLFNKTSVLEKTVQLATE. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05712 886 CDD PHD1_AIRE 542 582 - -
Seca7g05712 886 MobiDBLite consensus disorder prediction 119 141 - -
Seca7g05712 886 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 530 607 - -
Seca7g05712 886 ProSiteProfiles Zinc finger PHD-type profile. 612 673 IPR019787 -
Seca7g05712 886 MobiDBLite consensus disorder prediction 108 141 - -
Seca7g05712 886 MobiDBLite consensus disorder prediction 1 59 - -
Seca7g05712 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 603 IPR013083 -
Seca7g05712 886 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 723 873 IPR000182 GO:0016747
Seca7g05712 886 SMART PHD_3 542 583 IPR001965 -
Seca7g05712 886 SMART PHD_3 614 671 IPR001965 -
Seca7g05712 886 ProSiteProfiles Zinc finger PHD-type profile. 540 585 IPR019787 -
Seca7g05712 886 MobiDBLite consensus disorder prediction 42 56 - -
Seca7g05712 886 Pfam Tify domain binding domain 476 525 IPR032308 -
Seca7g05712 886 Pfam Tify domain binding domain 271 325 IPR032308 -
Seca7g05712 886 SUPERFAMILY FYVE/PHD zinc finger 538 588 IPR011011 -
Seca7g05712 886 ProSitePatterns Zinc finger PHD-type signature. 543 582 IPR019786 -
Seca7g05712 886 PANTHER AUTOIMMUNE REGULATOR 16 880 - -
Seca7g05712 886 FunFam PHD finger family protein 713 880 - -
Seca7g05712 886 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 770 856 IPR016181 -
Seca7g05712 886 Gene3D - 712 879 - -
Seca7g05712 886 FunFam PHD zinc finger protein 613 673 - -
Seca7g05712 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 673 IPR013083 -
Seca7g05712 886 MobiDBLite consensus disorder prediction 10 35 - -
Seca7g05712 886 ProSitePatterns Zinc finger PHD-type signature. 615 670 IPR019786 -
Seca7g05712 886 SUPERFAMILY FYVE/PHD zinc finger 610 668 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05712 Seca-Chr7 156261015 156271535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05712 1 886 PHD Transcription Factor Family AT3G53680 51.996 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05712 - - gmx:100808999 1585.08