Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05698 ATGATGAGGAGGTTCAGTGGTTCCGTTATCGAAGGAGAGGCATACAAGATGCATTATTTCGGTGTTGTTCGCAACCTGGGTTCATACCGATCAACAAAGCATGAGTTTAAGTTGGTTTTTCATCCGAGAACAAGAATAATGAGGTGTGATGTCGGTAACATTTCCTTGCATGGGCTTTCTCCCATGAATACTCAAGAGATAATGAGCACTAATGGTCGTAGCGACTATCTTGTGGATACGATTGGAGTCATGACTGCTGTGTCTGCTGAAAAACGTTCATTCCGTGATGGTCGCATGACTAGGGTGATGCAGATGGAGCTAACTGATGACAAGGGGAAGATTCAATGTGCTATGTTTGGCAACTATGATATGGTGGGGGATTTATTGCATGGGATTGGCAACGAATTGCCTGTTGTAGTGGTTATGTTTGCGAAGGTGAAGATGTACAAAGGTGAGGTGGTTTTGCAGAATGTTTTAAACACCACCAAAATACTCTGCAATCCTAACATTCCTGAAGTAGAGACTTTCCGTGATGGACTCACTATCCATGATATAGATATACTAGCACCAATGGGTGTTATACAGGAAGACCATCAAAGCATTCCCCTGAAGGAAGAGTTCCTTGCATCCCATCCTAGGAAAACGATCAAACAGCTTCATAACACTGAAGAGGATGGATTGTTCATTGTTTTGGCTTCGATAGTCACTGTCATTGGCAATGCTAACTGGTGGTATGCGGCCTGCAAATGCCATCGAGCTGTGACAATGGATGGTGACTCTTATTACTGCTCAGCATGTGGCATGCATGTGCAAGAAGTCTCTTCTAGGTTCAAGTTGAAACTTGAGGTATATGATGGCGAAGATACTGCTGCTTTCGTGCTTTTTGATTCAGATTCTGAGATGTTACTTGGTCGCAGTTGTGCTGCCATGTTATCTGACTTGAAGGATAATCCTCCTGATGACGTTTCATACCTTTTTGACGACATTGCTGGAAAAGAAGTTTTATTCAAAGTTGAGAAACCGTCTGACTATGCTTTCAAATTTGATGACTCTTTCCGAGTGAAGAAAATTTGTTGTGATACCTCTGTTATCAACGAATTCAAGGATGAAAATGCTGTCGTTACACCGGATGCTAGAGTTTTACGTGTTCCATTTCCTAACTTGGATGATATTCCTCAGGATGATGGTGGTAGAGGCGCAATACCTGGAGAAGAGTCTAAAGATACGTGTGTTGAACTGAATCCAGTTTCTTTAGATGAGGTGGTAAGTCCATCGGCAAAATGTTATGGAACCAATGAATCTGGGACAAGTAATGCTGCAAAGGAACGTGTCAAAGGGAAGAAAAAGCTGAAGCTCAAGGAAGCGGTTGTTTAG 1374 0.4243 MMRRFSGSVIEGEAYKMHYFGVVRNLGSYRSTKHEFKLVFHPRTRIMRCDVGNISLHGLSPMNTQEIMSTNGRSDYLVDTIGVMTAVSAEKRSFRDGRMTRVMQMELTDDKGKIQCAMFGNYDMVGDLLHGIGNELPVVVVMFAKVKMYKGEVVLQNVLNTTKILCNPNIPEVETFRDGLTIHDIDILAPMGVIQEDHQSIPLKEEFLASHPRKTIKQLHNTEEDGLFIVLASIVTVIGNANWWYAACKCHRAVTMDGDSYYCSACGMHVQEVSSRFKLKLEVYDGEDTAAFVLFDSDSEMLLGRSCAAMLSDLKDNPPDDVSYLFDDIAGKEVLFKVEKPSDYAFKFDDSFRVKKICCDTSVINEFKDENAVVTPDARVLRVPFPNLDDIPQDDGGRGAIPGEESKDTCVELNPVSLDEVVSPSAKCYGTNESGTSNAAKERVKGKKKLKLKEAVV. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05698 457 Gene3D - 206 369 IPR012340 -
Seca7g05698 457 Pfam Domain of unknown function DUF223 7 51 IPR003871 -
Seca7g05698 457 SUPERFAMILY Nucleic acid-binding proteins 211 365 IPR012340 -
Seca7g05698 457 CDD RPA1_DBD_B_like 79 177 - -
Seca7g05698 457 PANTHER OS03G0429900 PROTEIN 136 321 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca7g05698 457 Gene3D - 61 182 IPR012340 -
Seca7g05698 457 Gene3D - 1 50 IPR012340 -
Seca7g05698 457 CDD RPA1_DBD_C 214 338 IPR047192 -
Seca7g05698 457 SUPERFAMILY Nucleic acid-binding proteins 65 181 IPR012340 -
Seca7g05698 457 Pfam Replication factor-A C terminal domain 229 359 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05698 Seca-Chr7 156196781 156199371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05698 28 309 Core DNA Replication Machinery Family AT2G06510 21.290 2.12e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05698 - - lja:Lj1g3v3385890.1 356.295