Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05683 ATGAAGAGACAGAGAGAAACACAAGACTCTGAAAATACAACAAATTGTTTAATCATAACCGATACAAGTGCATCCATATTTGAGTGCAAGACATGCAACCGCAAATTCTTGTCATTTCAAGCACTGGGTGGCCACAGGGCTAGCCACAACCACAAGAGGCACAAGGTGGATGGGGCAGAACAACTGAGAGCAGGGGCCAAATCTCTCACCAAAATGTACAATTGCTCCATTTGTGGTCAAGAATTCTCTCTTGGCCAGGCTCTTGGAGGCCACATGAGAAGGCACACAGCTGCAACCAACCAACTGTTTTCTTCCATAAACAAGGTTGTTGCAAAAGTTTCACTCCTAAAGAGATCGTCATCATGTGATAGTGATACCAAGCATTTCAGCTTCGACCTCAACTTAACACCACTTGAGAATGACTTCAAGTTATTGTTGTTCGGCAATTTGAACCTAACGCCTTTGCAGAATGACTTGAAGTTATTGTTTGGAAACATGACACCCAAACTTCATTCCTTCGTTTGA 525 0.4286 MKRQRETQDSENTTNCLIITDTSASIFECKTCNRKFLSFQALGGHRASHNHKRHKVDGAEQLRAGAKSLTKMYNCSICGQEFSLGQALGGHMRRHTAATNQLFSSINKVVAKVSLLKRSSSCDSDTKHFSFDLNLTPLENDFKLLLFGNLNLTPLQNDLKLLFGNMTPKLHSFV. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05683 174 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Seca7g05683 174 Gene3D Classic Zinc Finger 25 95 - -
Seca7g05683 174 SMART c2h2final6 27 49 IPR013087 -
Seca7g05683 174 SMART c2h2final6 73 95 IPR013087 -
Seca7g05683 174 SUPERFAMILY beta-beta-alpha zinc fingers 71 98 IPR036236 -
Seca7g05683 174 PANTHER ZINC FINGER PROTEIN ZAT5 12 140 - -
Seca7g05683 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Seca7g05683 174 ProSitePatterns Zinc finger C2H2 type domain signature. 29 51 IPR013087 -
Seca7g05683 174 Pfam C2H2-type zinc finger 73 96 - -
Seca7g05683 174 Pfam C2H2-type zinc finger 27 49 - -
Seca7g05683 174 SUPERFAMILY beta-beta-alpha zinc fingers 23 54 IPR036236 -
Seca7g05683 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05683 Seca-Chr7 156048030 156055330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05683 27 162 C2H2 Transcription Factor Family AT3G53600 50.735 4.89e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05683 zf-C2H2_6 2.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05683 - - gmx:100793782 167.933