Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05682 ATGATGATGATGAAGAGGCCAAGAGAAATTGAAGAAACAGAGAGAATGGATCTGGCTAATAATCTGATGCTGCTCTCTCGTCCCATGGAGTTTGAGTGCAAGACATGTCACCGCAAATTCTCGTCGTTCCAAGCCTTGGGTGGCCACAGGGCTAGCCACAAGAAGCCAAAGGTTGAAGGAGAAGAAGCGAAATCAGAGGGAAAAACACAGAATTTGTTGGGGAATAAAGCGAAGATGCATGAGTGTTCCATTTGTGGACAGGTATTCTCTTTGGGACAGGCTCTTGGAGGACACATGAGAAGGCACAGGGCTGTTGCCATGAATGAAGATAAAGGGTTTTGTCCTATAAACGAAGCTATTGCAAAAGCACCAGTGTTGAAAAGATCGAATAGTAAGAGGATTATGTGCTTGGAATTGGACTTGAACTTGACGCCTTTGGAAAATGACTTGAAGTTGTTGTTTGGGAAGAAGGCTCCTCAAGTCCATCTTTCTTTGTTCTGA 501 0.4411 MMMMKRPREIEETERMDLANNLMLLSRPMEFECKTCHRKFSSFQALGGHRASHKKPKVEGEEAKSEGKTQNLLGNKAKMHECSICGQVFSLGQALGGHMRRHRAVAMNEDKGFCPINEAIAKAPVLKRSNSKRIMCLELDLNLTPLENDLKLLFGKKAPQVHLSLF. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05682 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Seca7g05682 166 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Seca7g05682 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Seca7g05682 166 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Seca7g05682 166 MobiDBLite consensus disorder prediction 47 70 - -
Seca7g05682 166 Pfam C2H2-type zinc finger 31 56 - -
Seca7g05682 166 Pfam C2H2-type zinc finger 80 104 - -
Seca7g05682 166 SMART c2h2final6 31 53 IPR013087 -
Seca7g05682 166 SMART c2h2final6 80 102 IPR013087 -
Seca7g05682 166 MobiDBLite consensus disorder prediction 52 66 - -
Seca7g05682 166 PANTHER ZINC FINGER PROTEIN ZAT5 23 149 - -
Seca7g05682 166 SUPERFAMILY beta-beta-alpha zinc fingers 31 102 IPR036236 -
Seca7g05682 166 Gene3D Classic Zinc Finger 29 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05682 Seca-Chr7 156044618 156045118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05682 4 163 C2H2 Transcription Factor Family AT2G37430 48.066 2.64e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05682 zf-C2H2_6 2.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05682 - - aprc:113870747 223.016