Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05671 ATGGGTAACGGGCATGGACATGGACATGGCCATGGCCATCGCAAACACCGTAACTCTGTCCCCCACAACACGGTTCCTCCTCCCTATATATATGGTCCTAGTTCTCGGCCCCAGCCATCATCAACAATCCCAAACCAGAACGTTGTTGCTTCCAATTCCATCATTATGAACTCTTTGCCGTACGCCCACGTCGACTCCACTCTCCGTGCCCTCGCCACACAGGCCGAGGGCTTTGGTCGCTTCGCAATCGGTGGACTTCACGGCCCCCTTTATCATGTCACCTCTCTCGCAGATGATGGACCAGGATCATTGCGTGACGCATGTCGCAGAAAAGAACCTTTATGGATTGTATTTGAGGTTTCAGGTACTATTCATCTTTCGTCGTATTTGAGTGTGTCGTCATACAAGACCATTGATGGAAGGGGCCAAAGGATTAAGCTCACTGGAAAGGGTTTGCGGCTGAAGGAGTGTGAGCATGTGATAATTTGCAATTTAGTGTTAGAAGGAGGAAGAGGGCCTGATGTTGATGGCATTCAGATCAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGTCTAAGTGATTTTGATGATGGCTTGATAGATATCACTAGAGAAAGCACTGATATCACTATTTCAAGGTGTCACTTTGCTCAGCATGACAAAACAATGCTCATTGGGGCAGATCCTTCACACGTTGGTGATAGATGCATCAGAGTCACCATACACCATTGTTTTTTTAATGGGACTAGACAGAGGCATCCTCGTGTTAGATTTGGAAAAGTACATCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGCCAGAAGAAGGTGGCATTTAAGTATCTTACTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGTCACATAAGGTCTGAAGGAGACTTGTTTTTGAATGGTGCTCAACCAGGATTAATGACTGCAGAGGGTGTTGGGTGTAACATGTTTCACCCCAGTGATTACTATCCCACTTGGACTGTGGAACCTCCTACAGATGAGCTAAAACAGGTTCTTCATCACTGCACTGGATGGCAATCTGTTGCGAGGCCAGCAGATCAAACAGTTTGCGCAGAATAG 1167 0.4619 MGNGHGHGHGHGHRKHRNSVPHNTVPPPYIYGPSSRPQPSSTIPNQNVVASNSIIMNSLPYAHVDSTLRALATQAEGFGRFAIGGLHGPLYHVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLVLEGGRGPDVDGIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFNGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKGAEASGHIRSEGDLFLNGAQPGLMTAEGVGCNMFHPSDYYPTWTVEPPTDELKQVLHHCTGWQSVARPADQTVCAE. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05671 388 SMART amb_all 101 299 IPR002022 -
Seca7g05671 388 Gene3D - 60 358 IPR012334 -
Seca7g05671 388 Pfam Pectate lyase 130 292 IPR002022 -
Seca7g05671 388 MobiDBLite consensus disorder prediction 1 45 - -
Seca7g05671 388 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Seca7g05671 388 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Seca7g05671 388 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Seca7g05671 388 SUPERFAMILY Pectin lyase-like 73 380 IPR011050 -
Seca7g05671 388 PANTHER PECTATE LYASE 18-RELATED 58 332 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05671 Seca-Chr7 155942340 155945645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05671 96 385 Polysaccharide Lyase AT3G55140 77.931 1.06e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05671 K01728 - gmx:100814368 642.499