Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05641 ATGGGTTGGATTCCGTGTTCTGGAACTTCAAACACTAAGAAGAAGAACAAGTTTGAGAAGATGGAAGTGCAGAACAGCCTGGTTGATCCGATCAAAGCCACCCCAGGGAAATTGAAGAGGAATTCATCCATGAATTCCAATGATTCCTCTAAAAATGGAAATCCTGATCACATTGCTGCACAGACATTCACATTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAGCAGAATGTCTTTTGGGCGAGGGAGGCTTTGGCAGAGTATACAAAGGGCGTTTGGAAAATATTAATCAGATTGTTGCGATTAAGCAACTTGACCGGAATGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCATCCTAACCTTGTCAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATACATGTCATTAGGATCCTTGGAAGACCACTTACATGGTATCAAGAAGCGACTTGATTGGAACACAAGAATGAAAATAGCTGCTGGGGCAGCAAAGGGATTGGAGTATCTACATGATAAAGCTAACCCTCCTGTCATATATCGAGATTTAAAGTGCTCAAACATTTTGCTAGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGTCCAGTGGGGGAGAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCACCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGAAAAGCTATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCGTGGGTAAGACACTTGGCTAGACCCTTGTTTAAAGATCGAAGAAAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCCAGAGGGATATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAATATGCGTCCAGTTATAGCTGATGTAGTCACAGCTTTGAGTTACCTTGCTTCACAAAGATATGACCCCAATACACAGACAGTACAAAGCTATCGCCTTCCTCCTGGCACTCCTCCTAGAAACAAGAGGGGACAGTGA 1149 0.4238 MGWIPCSGTSNTKKKNKFEKMEVQNSLVDPIKATPGKLKRNSSMNSNDSSKNGNPDHIAAQTFTFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHGIKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWVRHLARPLFKDRRKFSQMADPMLQGQYPPRGIYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPNTQTVQSYRLPPGTPPRNKRGQ. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05641 382 MobiDBLite consensus disorder prediction 363 382 - -
Seca7g05641 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Seca7g05641 382 MobiDBLite consensus disorder prediction 38 56 - -
Seca7g05641 382 FunFam Serine/threonine-protein kinase PBS1 152 368 - -
Seca7g05641 382 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Seca7g05641 382 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Seca7g05641 382 SMART serkin_6 75 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05641 382 Gene3D Transferase(Phosphotransferase) domain 1 152 369 - -
Seca7g05641 382 FunFam Serine/threonine-protein kinase PBS1 47 151 - -
Seca7g05641 382 CDD STKc_IRAK 81 350 - -
Seca7g05641 382 SUPERFAMILY Protein kinase-like (PK-like) 61 369 IPR011009 -
Seca7g05641 382 ProSiteProfiles Protein kinase domain profile. 75 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05641 382 PANTHER OS07G0668900 PROTEIN 22 362 - -
Seca7g05641 382 Pfam Protein tyrosine and serine/threonine kinase 79 347 IPR001245 GO:0004672|GO:0006468
Seca7g05641 382 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05641 Seca-Chr7 155630085 155633684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05641 29 372 Glycoside Hydrolase AT3G07070 64.368 1.41e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca7g05641 PK_Tyr_Ser-Thr 9.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05641 - - gmx:100776041 708.368