Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05639 ATGAGTGTTGATGGTGACAGCAAAGAGCTGAAAGAACTGAATCAGCGCTTACGGGATGAGAAAAAGACCTTTAAAGAAGGAGTTTCTGGTGAAGATAATGAAGTGAAATGTAATGGAGCAGCTGAAGAAGTTAAGGTTGGACAGGGGGGGAATGTGGAATCCTCTTCTGTCCAGCAGCATATACCACAGCAACAGCCTCAAGGGGCAATGATTTGTTGGGAGAGGTTTTTACATATTAGATCCCTTAAGGTCTTGCTTGTGGAGAATGATTACTCTACCCGCCATGTCGTCACTGCACTGCTTCGCAATTGTAGCTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTTGTTTTAACTGAGGTAGCAATGCCTGGCTTATCTGGCATTGGTCTTCTATACAAGATTATGAGCCACAAAACAAGGAAAAATATTCCAGTAATTATGATGTCATCTCTTGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGCGAAAGTGGCACACAAACCCAGAAGTCTGTAAAATCGAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGATGGGGATGACAATGGAAGTATAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCCAAACCAGTCTCCCAGTGGGATCAAATAACCGAGTGCCCTGATAGCACTTGTGCTCAAGTTGTTCACTCCAATGCTGAAATATGTGGGAACAAGGTGGTTCCTGTGGCCACAAAGGAGTGTCAAGAACAGAAGGAACAAATTGTCAAAACTGCAGGTTCGAAACATGGCAACACACTTGATGTAGGCCCCTCTAAATTCAATGAGCAAATTAATAGAGGACAACTGGATCTTAATTGTGAGAATCAATCTAGCAAGCTAAGGTGCAAAGGTCTTTCATTGTCTGATGCTATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGAATTTGAAGCCCTAAATAGAAGACCCAAGTCCTCAGATATTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGAGCTCAGTTTGAAAAGGCTTAGAGGGGTTAAAGATGCTGGTATTACAATTCAGGATGAACGGAATGTTTTGAGACGTTCCGATCAATCTGCTTTCTCAAGATACAATGCAGCCTCTAATACTAAGAAGTCTCCCACTGGATGTGTTGGAAGCAATTCTCCACATAATACTAGCTTAGAAGTCACAAAGAAAGATTCATCTCGTGACATTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGACGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTTTACTAAATCTACTGTTATAAGTGAGCCAGCAGTGGCATCAACAACTAAATGTTTGTACCAAACATCTGCTTTCCAGCCTGTAAAGAACAACCTTCTGTGTACCTCTCAACAAGTTGTCTTACATAATACTGAAGATACAACAACAATGCTGGCACCACCTAAAGTAGACACTCTTAAGGATTCTGCGACTCAGGACTTCCATTGCCATTATGAAAACCATAACTGTATTTCTAACAAAATACAGCACCAGCTGCCACCTGATCACGATGCTGAATCTTTAAAGAAAATGGCTGTTGCTGCTCCACATTGTGGGTCATCAAATGTGGTTGAAGTGCTAGTTGAAGGTAATATTGGAAATTGCAGTGTCAATAGAAGTGCCTCAGGTAGCAACAATGGAAGCAATGGACAAAATGGTAGCAGCACAGCAGTTAATGCTGGAGGGACAAACATAGAAAGCAACAATGGACTCACTGGGAATAGTGGCAGCGGTGATGCTAGTGGGAGTGGAAGTGCCAACAGAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCAGCTCTAACTAAATTTCGCCAAAAGAGAAAGGAGAGAAAGGAGAGGTGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAACAACGACCTCGGTTTCGTGGACAATTTGTGCGACAGTCCTCTAACGAAAAATCAAGTGAGGCAACAGATAGCTGA 2247 0.4148 MSVDGDSKELKELNQRLRDEKKTFKEGVSGEDNEVKCNGAAEEVKVGQGGNVESSSVQQHIPQQQPQGAMICWERFLHIRSLKVLLVENDYSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIGLLYKIMSHKTRKNIPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSDNNSGSNDGDDNGSIGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQITECPDSTCAQVVHSNAEICGNKVVPVATKECQEQKEQIVKTAGSKHGNTLDVGPSKFNEQINRGQLDLNCENQSSKLRCKGLSLSDAITSTSDSQMHSGEFEALNRRPKSSDIENKGTNNDEELPSLELSLKRLRGVKDAGITIQDERNVLRRSDQSAFSRYNAASNTKKSPTGCVGSNSPHNTSLEVTKKDSSRDIQSHSSGNPPNQNSNDASNNIDMGSTTNNAFTKSTVISEPAVASTTKCLYQTSAFQPVKNNLLCTSQQVVLHNTEDTTTMLAPPKVDTLKDSATQDFHCHYENHNCISNKIQHQLPPDHDAESLKKMAVAAPHCGSSNVVEVLVEGNIGNCSVNRSASGSNNGSNGQNGSSTAVNAGGTNIESNNGLTGNSGSGDASGSGSANRVDQNKTSQREAALTKFRQKRKERKERCFHKKVRYQSRKKLAEQRPRFRGQFVRQSSNEKSSEATDS. 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05639 748 Coils Coil 3 27 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 437 469 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 372 406 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 731 748 - -
Seca7g05639 748 ProSiteProfiles CCT domain profile. 694 736 IPR010402 GO:0005515
Seca7g05639 748 ProSiteProfiles Response regulatory domain profile. 83 201 IPR001789 GO:0000160
Seca7g05639 748 MobiDBLite consensus disorder prediction 206 267 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 635 693 - -
Seca7g05639 748 SUPERFAMILY CheY-like 80 206 IPR011006 -
Seca7g05639 748 MobiDBLite consensus disorder prediction 701 719 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 436 504 - -
Seca7g05639 748 FunFam Two-component response regulator-like PRR37 82 240 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 480 504 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 206 280 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 382 406 - -
Seca7g05639 748 MobiDBLite consensus disorder prediction 635 748 - -
Seca7g05639 748 CDD psREC_PRR 84 187 - -
Seca7g05639 748 SMART REC_2 82 197 IPR001789 GO:0000160
Seca7g05639 748 PANTHER TWO-COMPONENT RESPONSE REGULATOR 82 438 IPR045279 GO:0009736
Seca7g05639 748 Gene3D - 81 235 - -
Seca7g05639 748 Pfam Response regulator receiver domain 84 195 IPR001789 GO:0000160
Seca7g05639 748 Pfam CCT motif 691 736 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05639 Seca-Chr7 155606237 155620613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05639 158 747 Response Regulator Gene Family AT5G02810 48.259 5.50e-120 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca7g05639 Response_reg 1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05639 K12129 - gmx:100806454 1196.42