Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05636 ATGCCGCCAAAGCAGCAATCAAAAGCTGATTTAGCGAAAAAGCAGAAGGTTGTAGAGGACAAAACCTTCGGTCTCAAAAACAAAAACAAGAGCAAGCAAGTCCAGAAATATGTTCAGAACCTCAAACAATCCGTGCAGCCCAGACCCGATGCTTCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGCTGAATGATTTGTTCAAAATCGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAATCCATATTATGTGAGTTTTATAAAGTGGGGCAGTGTGCCAAGGGCTTCAAGTGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACTTATACAGTGATAAGCGTGACCAGGAAACAATGGAGGATTGGGATCAGGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAACGGAGTATAATCAGAACAAACCAACTGACATAGTCTGTAAATACTTTTTGGAAGCAGTAGAGAAGAAGCAATATGGTTGGTTTTGGGCCTGCCCCAATGGTGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCTCAGATGAAGGCTTTGTTAGAGGAAGAAGCTGAAAAAATATCAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGACAACTACAACTCCTATGACTCCTGAGTTATTCTTTCAATGGAAGAAGAAGAAGGTAGAAGAGAGAGATGCCAGAATGGCTGAACAACAGGCAGAGAGGGCTAAAAATGACCGCATGAGTGGTCGTGAACTATTTTTGTCAGATGCTAGTTTGTTTGTGGATGATGCCGAAGCATACGAGAAGTACCAAAGAGAACCAGAATCTGATGAAACTGAACAGAACGGGAATGGGAATGCTGCTGAAGATGGTCCTAGCACCTCAGCAACAGGTGGTGCTGATGCTGATGAAGTTCTTGATGACATTGATGATGATGATGATGATGAATTGGACATGGATGAGTTGAACGAACTGGAAGCAAGCCTATCCAAGACTTCAATCCAAATAAAGGAAACATGA 1083 0.4284 MPPKQQSKADLAKKQKVVEDKTFGLKNKNKSKQVQKYVQNLKQSVQPRPDASKVDAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDLYSDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWACPNGGKNCHYRHALPPGYVLKSQMKALLEEEAEKISIEEEIENQRAKVTTTTPMTPELFFQWKKKKVEERDARMAEQQAERAKNDRMSGRELFLSDASLFVDDAEAYEKYQREPESDETEQNGNGNAAEDGPSTSATGGADADEVLDDIDDDDDDELDMDELNELEASLSKTSIQIKET. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05636 360 Coils Coil 201 228 - -
Seca7g05636 360 MobiDBLite consensus disorder prediction 40 63 - -
Seca7g05636 360 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Seca7g05636 360 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Seca7g05636 360 Gene3D - 87 204 - -
Seca7g05636 360 Coils Coil 246 266 - -
Seca7g05636 360 Coils Coil 51 73 - -
Seca7g05636 360 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Seca7g05636 360 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Seca7g05636 360 Pfam DRG Family Regulatory Proteins, Tma46 215 300 IPR032378 -
Seca7g05636 360 Gene3D - 205 279 - -
Seca7g05636 360 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Seca7g05636 360 MobiDBLite consensus disorder prediction 324 344 - -
Seca7g05636 360 Coils Coil 343 360 - -
Seca7g05636 360 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Seca7g05636 360 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 359 - -
Seca7g05636 360 MobiDBLite consensus disorder prediction 287 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05636 Seca-Chr7 155574995 155579413 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g05636 DFRP_C 2.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05636 - - gmx:100778701 612.068