Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05634 ATGAGATCAGCAGAGTGGAAGTTGTGTTGGGACAATTGGACGATCGCAAGTTGTGCACCGCACATGTACCCAACCCGCCACGCCACATCCTCTCTTTCTATCTCTATCTCTAACTTCTTTTGGACCCTATGTTCTTTGTGGCACACCATCATCAACTCCAACACTTCCCATTCTCAGTCAATGGCTACACCACCACCCACTGATGCCTCTGCCAAGAAGGTCAGAAAGCCCTACACCATTACCAAGTCCAGAGAGAGCTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACTGTAGCACATGTGCCTCCTCCTCGTCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAAGCATCCAAAAATGTTTTGGTGCCACTACCAGCTTCCATTCATTATGTTTCTTCGACAAATACCCTTGCTCCTGGGTATGCCACATGGGATGAAACTTCCATGCTGATGAATGCCGGGTCCAATAAACCCATGATCTGTCAGGATGAACTCAACATTCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAACAACAGTGTTAGTGGTGTTGGGAACTCTACTAGAAGGATACTGACTTCTGAGATACCAAAGCAAGGGAAACAGGCTCCAGTGCTTCATGGTTTGCCAGACTTTGCTGAAGTTTACAGTTTTATTGGAAGTGTTTTTGATCCAGATACAAATGGTCATGTTCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAATCTCACTGTCAACTTGTCTAGCCCTGACTTTGAGTCTATTGTAAGTTTCAATATCAATCTCAATTATGATTATATACTTTTTCGAATTATTTGCCAAAAAAATTATTTTGTTTTGAAAGATATGTAA 1023 0.4125 MRSAEWKLCWDNWTIASCAPHMYPTRHATSSLSISISNFFWTLCSLWHTIINSNTSHSQSMATPPPTDASAKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIHYVSSTNTLAPGYATWDETSMLMNAGSNKPMICQDELNILHGNEADIGSKGITQINNSVSGVGNSTRRILTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFESIVSFNINLNYDYILFRIICQKNYFVLKDM. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05634 340 ProSiteProfiles SANT domain profile. 82 135 IPR017884 -
Seca7g05634 340 SMART sant 83 131 IPR001005 -
Seca7g05634 340 Gene3D - 87 134 - -
Seca7g05634 340 CDD SANT 86 129 IPR001005 -
Seca7g05634 340 PANTHER SWI/SNF COMPLEX-RELATED 55 305 - -
Seca7g05634 340 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Seca7g05634 340 FunFam protein REVEILLE 6 isoform X1 86 134 - -
Seca7g05634 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Seca7g05634 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 131 IPR006447 GO:0003677
Seca7g05634 340 SUPERFAMILY Homeodomain-like 78 134 IPR009057 -
Seca7g05634 340 MobiDBLite consensus disorder prediction 56 75 - -
Seca7g05634 340 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05634 Seca-Chr7 155534241 155539649 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g05634 Myb_DNA-binding 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05634 - - gsj:114372630 465.692