Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05626 ATGGCCGATGCTCCGACGAGTCCCGGAGGCGGAGGCGACCACGAGAGCGGCGGCGACCACAGTCCGCGCTCCAATTTCCGAGAGCAGGATCGGTACCTTCCCATCGCCAACATCAGCCGCATCATGAAGAAGGCGCTTCCTGCAAACGGAAAAATCGCCAAGGACGCCAAGGAGACAGTTCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACTAGCGAGGCGAGCGATAAGTGCCAGAAAGAAAAGAGGAAGACCATTAACGGTGATGATTTGCTTTGGGCAATGGCTACTCTGGGTTTCGAGGATTATATTGATCCACTCAAAATTTACCTCACCACATACAGAGAGGGTGATACAAAGGGCTCAGCCAAGGGTGGAGATGCATCTGCTAAGAAAGATGTTCATCTGAGTCCTAGTGCCCAGCTTGCTCATCAAGGTTCTTTCTCACAAGTTGTTAATTACTCGAATTCTCAGGAATTTCTATTTAATCCCTTTTCCTCCCAAAAACTTTTTATTTGGAGCTTGCTGTAG 534 0.4925 MADAPTSPGGGGDHESGGDHSPRSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKIYLTTYREGDTKGSAKGGDASAKKDVHLSPSAQLAHQGSFSQVVNYSNSQEFLFNPFSSQKLFIWSLL. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05626 177 SUPERFAMILY Histone-fold 29 127 IPR009072 GO:0046982
Seca7g05626 177 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Seca7g05626 177 MobiDBLite consensus disorder prediction 1 29 - -
Seca7g05626 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca7g05626 177 Gene3D Histone, subunit A 19 157 IPR009072 GO:0046982
Seca7g05626 177 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca7g05626 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Seca7g05626 177 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Seca7g05626 177 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Seca7g05626 177 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05626 Seca-Chr7 155442609 155444226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05626 7 166 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.892 1.10e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca7g05626 CBFD_NFYB_HMF 6.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05626 K08065 - csav:115711255 274.633