Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g05587 | ATGGGTAATATAGGAAGTAGCGGAGCACACAACCGTCGGAGACACAGTGGCAGCAACAGCGGCCGGCGAATTCATCCTCCGCCGCATCCGCCGGTGGCGGCACAGCCGGAAATGGCGGCCAACCGATTCGTGTACCCCGCCGCTGCTACCCCGTATCACAACTACCCAGGTTACTATCCGCCGCCACCGACAACTGGGCCGGTGCCTTTGCCGGCACCGTTCGATCACCATCACCGTCCGGCGATGGACCCAATGTGGGGGCGTTACCCGGCACCGCCGCCGCCGCAACCGGCTCCCTATGTAGAGCATCAGAAGGCGGTTACTATAAAGAACGATGTGAACATCAAGAAGGAGACTCTGAGGATTGAGCCTGATGAGGAAAATCCTGGCCATTTCCTTGTGTCATTCACTTTTGACGCCACCGTTTCTGGGAGCATCACCATAATTTTCTTCGCAAAAGAAGGTGAAGGTTGCATCCTTACCCCAATGAAAGAAGATGTTCTTCGACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGGACTGGTATCAATTTTTCAGTATTTGAGGAGTCTGAGCTATTGAAAGTGGGTGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCAACCAAGACGGATCAAATGAAACTCCAACATCTGGTGGTACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATCTGCTTGTCTGAGCCTCGGGACACAACTGTCCTTCCCTGCCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAATCTGAGGAGTGA | 1047 | 0.5081 | MGNIGSSGAHNRRRHSGSNSGRRIHPPPHPPVAAQPEMAANRFVYPAAATPYHNYPGYYPPPPTTGPVPLPAPFDHHHRPAMDPMWGRYPAPPPPQPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGHFLVSFTFDATVSGSITIIFFAKEGEGCILTPMKEDVLRPVTVNFQQGLGQKFRQPAGTGINFSVFEESELLKVGDMDVYPVAVKADASSGNQDGSNETPTSGGTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPESEE. | 349 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g05587 | 348 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Seca7g05587 | 348 | MobiDBLite | consensus disorder prediction | 219 | 237 | - | - | |
Seca7g05587 | 348 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 341 | IPR013083 | - | |
Seca7g05587 | 348 | PANTHER | MAHOGUNIN | 1 | 341 | IPR045194 | GO:0061630 | |
Seca7g05587 | 348 | Pfam | Zinc finger, C3HC4 type (RING finger) | 290 | 336 | - | - | |
Seca7g05587 | 348 | SUPERFAMILY | RING/U-box | 291 | 336 | - | - | |
Seca7g05587 | 348 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 276 | 341 | - | - | |
Seca7g05587 | 348 | SMART | ring_2 | 292 | 330 | IPR001841 | - | |
Seca7g05587 | 348 | ProSiteProfiles | Zinc finger RING-type profile. | 292 | 331 | IPR001841 | - | |
Seca7g05587 | 348 | CDD | mRING-HC-C3HC5_MGRN1-like | 290 | 331 | IPR045195 | - | |
Seca7g05587 | 348 | MobiDBLite | consensus disorder prediction | 217 | 237 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g05587 | Seca-Chr7 | 154803865 | 154807683 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g05587 | 96 | 311 | C3H Transcription Factor Family | AT3G09770 | 68.919 | 1.38e-103 | 306 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g05587 | - | - | gmx:100783831 | 568.155 |