Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05587 ATGGGTAATATAGGAAGTAGCGGAGCACACAACCGTCGGAGACACAGTGGCAGCAACAGCGGCCGGCGAATTCATCCTCCGCCGCATCCGCCGGTGGCGGCACAGCCGGAAATGGCGGCCAACCGATTCGTGTACCCCGCCGCTGCTACCCCGTATCACAACTACCCAGGTTACTATCCGCCGCCACCGACAACTGGGCCGGTGCCTTTGCCGGCACCGTTCGATCACCATCACCGTCCGGCGATGGACCCAATGTGGGGGCGTTACCCGGCACCGCCGCCGCCGCAACCGGCTCCCTATGTAGAGCATCAGAAGGCGGTTACTATAAAGAACGATGTGAACATCAAGAAGGAGACTCTGAGGATTGAGCCTGATGAGGAAAATCCTGGCCATTTCCTTGTGTCATTCACTTTTGACGCCACCGTTTCTGGGAGCATCACCATAATTTTCTTCGCAAAAGAAGGTGAAGGTTGCATCCTTACCCCAATGAAAGAAGATGTTCTTCGACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGGACTGGTATCAATTTTTCAGTATTTGAGGAGTCTGAGCTATTGAAAGTGGGTGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCAACCAAGACGGATCAAATGAAACTCCAACATCTGGTGGTACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATCTGCTTGTCTGAGCCTCGGGACACAACTGTCCTTCCCTGCCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAATCTGAGGAGTGA 1047 0.5081 MGNIGSSGAHNRRRHSGSNSGRRIHPPPHPPVAAQPEMAANRFVYPAAATPYHNYPGYYPPPPTTGPVPLPAPFDHHHRPAMDPMWGRYPAPPPPQPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGHFLVSFTFDATVSGSITIIFFAKEGEGCILTPMKEDVLRPVTVNFQQGLGQKFRQPAGTGINFSVFEESELLKVGDMDVYPVAVKADASSGNQDGSNETPTSGGTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPESEE. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05587 348 MobiDBLite consensus disorder prediction 1 37 - -
Seca7g05587 348 MobiDBLite consensus disorder prediction 219 237 - -
Seca7g05587 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 341 IPR013083 -
Seca7g05587 348 PANTHER MAHOGUNIN 1 341 IPR045194 GO:0061630
Seca7g05587 348 Pfam Zinc finger, C3HC4 type (RING finger) 290 336 - -
Seca7g05587 348 SUPERFAMILY RING/U-box 291 336 - -
Seca7g05587 348 FunFam probable E3 ubiquitin-protein ligase LOG2 276 341 - -
Seca7g05587 348 SMART ring_2 292 330 IPR001841 -
Seca7g05587 348 ProSiteProfiles Zinc finger RING-type profile. 292 331 IPR001841 -
Seca7g05587 348 CDD mRING-HC-C3HC5_MGRN1-like 290 331 IPR045195 -
Seca7g05587 348 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05587 Seca-Chr7 154803865 154807683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05587 96 311 C3H Transcription Factor Family AT3G09770 68.919 1.38e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05587 - - gmx:100783831 568.155