Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05567 ATGACGACTCGAATAGCGCCAGGTGTCGGAGCAAATTTGCTGGGTCAGCACTCGGCAGAGAGGAATCAAGATGCTACTGCGTACGTTGGCAACCTTGACCCTCAGGTAACCGAGGAGTTATTGTGGGAGCTATTTGTTCAGGCAGGTCCCGTGGTTAATGTCTATGTTCCAAAGGACAGAGTGACCAACCAACATCAAGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAACTGTATGGAAAACCAATACGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGAGGTTTTGGCTTCATTAGCTACGATTCATTCGAGGCATCTGATTCTGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACCAAAGGTGAAAGGCATGGTACTCCTGCAGAGAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGGCCTCATACATTATTTGCCAGTGGGCCTCCAACTCTTCCCAATGTTCCTCAGGCTAATGGCACCATTGCTGCTCCAGTGCCTCCCCGTCCCTTTGCTAATGGGGTTGCTCCACCTGCTATTCCTGCCCTCCGTCCACCACCTCCTCAAGCGGCAGCCTTCCATCCTATGCCGGTAGCTGGACAACCAGCATGGCCTCAACATCAGCCAGGTCAAACTATGCTGCCACCACCTGTAATGCCCCCACCTCAAGTACAGCAGTTCCGGCCACCTCCCTCTGGTATGCAGATGCCTCCACCTCCGCAAGCTGTTCCACCTCCTCCAAGGCCTCTTCCACCACCATCAGTAATGACAAGCCAGCCACCACCTGTTTGGAGACCACCACCGCCACCACCCCAGCAACAGGGTGGACGTCCTATGGCATATCCTCATTCTTCAATGCCACCACCACCTCCCAATAACCCTGCCTGA 1122 0.4929 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVPQANGTIAAPVPPRPFANGVAPPAIPALRPPPPQAAAFHPMPVAGQPAWPQHQPGQTMLPPPVMPPPQVQQFRPPPSGMQMPPPPQAVPPPPRPLPPPSVMTSQPPPVWRPPPPPPQQQGGRPMAYPHSSMPPPPPNNPA. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05567 373 SMART rrm1_1 26 99 IPR000504 GO:0003723
Seca7g05567 373 SMART rrm1_1 113 187 IPR000504 GO:0003723
Seca7g05567 373 CDD RRM1_SF3B4 28 100 IPR034158 -
Seca7g05567 373 CDD RRM2_SF3B4 111 193 IPR034159 -
Seca7g05567 373 MobiDBLite consensus disorder prediction 287 373 - -
Seca7g05567 373 MobiDBLite consensus disorder prediction 255 373 - -
Seca7g05567 373 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 368 - -
Seca7g05567 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Seca7g05567 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Seca7g05567 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Seca7g05567 373 Gene3D - 16 106 IPR012677 -
Seca7g05567 373 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Seca7g05567 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Seca7g05567 373 Gene3D - 107 204 IPR012677 -
Seca7g05567 373 FunFam splicing factor 3B subunit 4 109 200 - -
Seca7g05567 373 MobiDBLite consensus disorder prediction 255 271 - -
Seca7g05567 373 FunFam Splicing factor 3b subunit 4 16 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05567 Seca-Chr7 154536773 154546005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05567 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.798 2.80e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05567 K12831 - gmx:100791039 571.622