Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05561 ATGGCTTCTAATATATCAAGATCTGTAAGATTTCATGATGATGTTGAAACAGAGAAGTTAAAGAAAAGCCAAGAAGATCACTTGTCAATGCTAGCCTATGAGATGAGTGATGAACAGAAGCTTGGAAATGATGAAGATGAAATAGGGAAGTCATTGGATGGAAGAGAACTTTCCAGGGTTTTTTCTGAGGATTATGATGCAGCAGAGATATTGATATTGGATCCTAGGGGACCAAGAGTAAATAGATGGAACAAAGTTTTCTTAGCAGCCTGTTTGATTTCATTATTTGTGGATCCACTATTCTTTTACTTACCAGTGGCTAAGAAAGAAAAGTGCATTGATATGTCTGCTGGTCTTGAAATATCCCTTACCATAATTCGGTCAATGATTGATGCATTTTATATTATTCAGATTTATGTTAGGTTTCAAACTGCTTATATAGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAGATTGCATCAAAGTACTTACGTAGAGACTTTTGGTTTGATCTAATGGCTGCCCAACCACTTCCACAGGTACTGATTTGGGCTGTAATTCCAAGTCTAAAGGGGTCACAAATGATTGCTTCAAGGCAAATTTTGCGCCTTGCTACCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTATCTTCTGAAATCATCAAGGCAAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATTTGACTCTCTATATGCTTGCAAGTCATGTTTTAGGATCCTCTTGGTACCTGTTATCCATTGAACGGCAGGATGAATGTTGGAAGAAGGCTTGCACACTTCAGTACCCACATTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAGATAGGACTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTCTGTGATCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGCTGATGCTCTCACTATGAAAATTACCAGCTCAAAATTCTTCAACAAATACTATTACTGTCTTTGGTGGGGACTGAGGAATCTAAGCTCTGTAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTTTGCGGCTAGAAGAATGGAGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAACTCCCCCATTACCTGAAGCAAAATGTGCGACGCCATGACCAATTCAGATGGGTAGCTACAAGGGGAGTAGATGAGGAAGCTATTCTAAGAGACCTTCCTGTGGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAGGTACCACTATTTGATCAGATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGTTGAAGCCTTCTCTGTGCACCCCAGGCACATGCCTAGTTCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATTGTTAGAGGACGCTTAGATTCTTGTACCACCAATGGTGGCAGAACTGGGTTCTTTAACTCATGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTTTTGCCATGGGCCTTAGACCCTCGTCCAATAGTTGTCCTTCCTTCCTCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCTTTTGCACTCATTGCTGAGGACTTGAAGTTTGTGGCAGCACAATTCCGCAGGTTACACAGCAAACAACTTAGGCACACATTTAGGTTCCACTCCCATCAATGGAGAACATGGGCTGCATGCTTTATACAAGCAGCTTGGTTCAGATATAAAAGAATGAAAGAGACAATTGAGCTCAAGAGAAAGGAGGATCTGATGATGGCTTATGTACCTGGAATTGGCAATGAACATTTCTCTGCTCCTCTGCAGGGCCCAATGGGCTCAAGTTTTTCAATGTATGCTGCAAAAATCACAGCTAGCCCAAGGAAAGGTAGGAGCTTGAGATATGGTTCTGAACTAGACATTCTTGGGGCATTGAGGAAGCCCCTTGAACCAAACTTCAATGATGATGATATTTGA 2124 0.4171 MASNISRSVRFHDDVETEKLKKSQEDHLSMLAYEMSDEQKLGNDEDEIGKSLDGRELSRVFSEDYDAAEILILDPRGPRVNRWNKVFLAACLISLFVDPLFFYLPVAKKEKCIDMSAGLEISLTIIRSMIDAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKIASKYLRRDFWFDLMAAQPLPQVLIWAVIPSLKGSQMIASRQILRLATIFQYLLRLYLIYPLSSEIIKANGVMMEKAWAGAAYNLTLYMLASHVLGSSWYLLSIERQDECWKKACTLQYPHCQYHYLDCQSIGDPDRTAWFRSSNLSGLCDQNSDFFQFGIFADALTMKITSSKFFNKYYYCLWWGLRNLSSVGQNLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTERWMHHRQLPHYLKQNVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDPVNEMLFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPIVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETIELKRKEDLMMAYVPGIGNEHFSAPLQGPMGSSFSMYAAKITASPRKGRSLRYGSELDILGALRKPLEPNFNDDDI. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05561 707 ProSiteProfiles cAMP/cGMP binding motif profile. 475 560 IPR000595 -
Seca7g05561 707 Gene3D Helix hairpin bin 403 466 - -
Seca7g05561 707 SUPERFAMILY cAMP-binding domain-like 405 597 IPR018490 -
Seca7g05561 707 PRINTS EAG/ELK/ERG potassium channel family signature 138 147 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca7g05561 707 PRINTS EAG/ELK/ERG potassium channel family signature 370 381 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca7g05561 707 PRINTS EAG/ELK/ERG potassium channel family signature 438 445 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca7g05561 707 PRINTS EAG/ELK/ERG potassium channel family signature 388 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca7g05561 707 PRINTS EAG/ELK/ERG potassium channel family signature 255 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca7g05561 707 PRINTS EAG/ELK/ERG potassium channel family signature 344 361 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca7g05561 707 Pfam Ion transport protein 83 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca7g05561 707 SUPERFAMILY Voltage-gated potassium channels 74 397 - -
Seca7g05561 707 CDD CAP_ED 475 606 IPR000595 -
Seca7g05561 707 Gene3D Jelly Rolls 473 593 IPR014710 -
Seca7g05561 707 FunFam Cyclic nucleotide-gated ion channel 1 473 591 - -
Seca7g05561 707 SMART cnmp_10 475 606 IPR000595 -
Seca7g05561 707 Gene3D - 91 399 - -
Seca7g05561 707 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 57 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05561 Seca-Chr7 154406633 154412872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05561 49 705 Ion Channels AT2G28260 64.536 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05561 K05391 - gmx:100815543 1234.94