Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05560 ATGTCTACCTCTGCGGCTTCTCTAGCACTTCCCACTCTCCAAACCAAACAACCTCTGTGTTCTCCCCAACGTTTCTCTTCTTCCCTCTCCCTCTCTATCAACCCTAACTTCAAGCCGGTGTCCATTTCCGCGGCTTTTCTTCGTCCTACATTGTCGCTGTCGTCTCGTTTCGTTTCCCGTGTTGCCCTCTCCTCCGAATTCGACCAGGAAGAGGACACCTTCAGCGATGGTGACAGCCCCAACTACTCCCCTGACCTCAAGCTCTTCGTTGGTAACCTTCCTTTCAGTGTCGACAGTGCCCAACTCGCTGAGCTTTTCGAAAACGCTGGGAATGTCGAGATGGTTGAGGTGATTTATGATAAAATGACTGGGAAAAGCAGGGGTTTTGGTTTTGTGACCATGTCTTCGGCTGAGGAAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTGGATGGAAGGCAATTGAGAGTAAATTCTGGACCACCACCATCTCGGAGCGAGAACCCTCGTTTTAGAGCTCCTTCTAGAGGTGGTTCTTTCTCAGATAATGATAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTTGACAATTTAGCACTTGAGTCATTGTTTCGCGAACAAGGAAATGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGCCCAGAAGAGGTCAGCAGTGCTATTGAGTCCTTAGATGGTGCGGACTTGAATGGCAGAGCTATAAGAGTCTCGTTAGCAGATGCTAAGCCCAGGCGTCAATTTTGA 816 0.4804 MSTSAASLALPTLQTKQPLCSPQRFSSSLSLSINPNFKPVSISAAFLRPTLSLSSRFVSRVALSSEFDQEEDTFSDGDSPNYSPDLKLFVGNLPFSVDSAQLAELFENAGNVEMVEVIYDKMTGKSRGFGFVTMSSAEEVEAAAQQFNGYELDGRQLRVNSGPPPSRSENPRFRAPSRGGSFSDNDNRVHVGNLAWGVDNLALESLFREQGNVLEAKVIYDRESGRSRGFGFVTYSSPEEVSSAIESLDGADLNGRAIRVSLADAKPRRQF. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05560 271 MobiDBLite consensus disorder prediction 156 186 - -
Seca7g05560 271 FunFam 28 kDa ribonucleoprotein, chloroplastic 182 269 - -
Seca7g05560 271 Gene3D - 163 271 IPR012677 -
Seca7g05560 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Seca7g05560 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Seca7g05560 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Seca7g05560 271 FunFam Ribonucleoprotein A, chloroplastic 63 181 - -
Seca7g05560 271 PANTHER OS02G0815200 PROTEIN 20 269 - -
Seca7g05560 271 CDD RRM2_NsCP33_like 188 263 - -
Seca7g05560 271 Gene3D - 58 161 IPR012677 -
Seca7g05560 271 SUPERFAMILY RNA-binding domain, RBD 184 270 IPR035979 GO:0003676
Seca7g05560 271 SMART rrm1_1 188 261 IPR000504 GO:0003723
Seca7g05560 271 SMART rrm1_1 87 160 IPR000504 GO:0003723
Seca7g05560 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Seca7g05560 271 SUPERFAMILY RNA-binding domain, RBD 80 181 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05560 Seca-Chr7 154402240 154404797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05560 88 270 Eukaryotic Initiation Factors Gene Family AT4G34110 31.694 5.14e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05560 - - gmx:100786275 395.201