Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05549 ATGGCCGCAACAACCAATGGAAACCATGACGCCACCACTTTTTGCTTGAGCAGTGCTGGTGGTGATCCTCTCAACTGGGGAGCAGCCGCTGAGTCACTCAAGGGGAGCCACTTGGATGAGGTGAAGCGCATGGTGGCCGAGTACCGGAAGCCGGTGGTGAGGATCGGCGGCGAGGCCCTGACAATCGCTCAGGTGGCTGCCATCGCCACACATGATCAAGGGGTTAAGGTAGAACTGTCGGAGTCAGCCAGGGCTGGTGTTAAGGCCAGTAGTGACTGGGTGATGGACAGCATGAACAAAGGAACGGACAGTTACGGCGTCACCACCGGTTTCGGTGCTACCTCTCACCGCCGAACCAAACAAGGCGGTGCCCTGCAGAAGGAGCTTATTAGGTTTTTAAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGTACCCTACCACACACCGCAACTAGAGCAGCCATGCTAGTGAGAATTAACACTCTTCTTCAAGGGTACTCAGGCATTAGATTTGAGATTTTGGAAGCTATCACCAAGCTCCTAAACAACAACATTACCCCATGTTTGCCACTTCGGGGTACCATTACAGCTTCTGGTGATCTTGTTCCCCTTTCTTACATTGCTGGTTTGCTAACCGGTCGACCCAACTCTAAGGCTGTTGGACCCTCTGGAGAAATTCTCAATGCTAAGGAAGCTTTTCAAGTGGCAAATATTGGTGCTGAGTTCTTTGAATTGCAACCTAAGGAAGGCCTTGCCCTTGTCAATGGCACTGCTGTCGGTTCTGGCTTAGCTTCTATGGTTCTCTTTGAGGCAAACATATTGGCTGTCTTATCTGAAGTCCTTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTCACAGACCATTTGACTCATAAGCTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATCATGGAACACATTTTGGATGGAAGCTCCTATATTAAAGCAGCTAAGAAGTTACACGAGATGGATCCTCTGCAAAAGCCTAAACAAGATCGTTATGCCCTTAGAACTTCACCACAATGGCTTGGTCCTTTGATTGAAGTGATTAGATTTTCAACCAAGTCAATTGAGAGAGAGATAAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCTTGCATGGTGGTAACTTCCAAGGAACCCCTATTGGAGTCTCAATGGATAACACACGTTTGGCTCTCGCTTCAATTGGTAAACTCATGTTTGCACAGTTTTCTGAGCTTGTTAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATATCTTGCAAACCCAGTAACAAGCCATGTTCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCTAGAAAAACAAATGAGTCTATTGAGATTCTGAAACTCATGTCTTCCACATTCTTGATCGCACTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACAATCAAGAATACTGTAAGCCAAGTTGCCAAGAGAACACTTACCACAGGTGTTAATGGAGAACTCCATCCTTCTAGATTTTGTGAGAAAGATTTGCTGAAAGTTGTCGATAGGGAGTATGTGTTTGCATATGTTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAATTAAGGCAGGTTCTTGTGGACCATGCATTAGCAAATGCAGAGAGCGAGAAGAACCTGAACACTTCAATCTTTCAAAAGATTGCAACATTTGAGGATGAATTAAAGGCTCTCTTACCAAAGGAGGTTGAAGGTGCAAGGATTGCATATGAGAATGACCAATGTGCAATTCCGAACAAGATTAAGGAGTGTAGGTCTTACCCATTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTAAGTTGCTAACGGGGGAAAAGGCCATATCACCAGGTGAGGAGTGTGACAAACTATTCACTGCAATGTGCCAAGGTAAAATTATTGATCCTATTATGGAATGCCTTGGAGAGTGGAATGGTGCTCCTATTCCAATCTGTTAG 2142 0.4482 MAATTNGNHDATTFCLSSAGGDPLNWGAAAESLKGSHLDEVKRMVAEYRKPVVRIGGEALTIAQVAAIATHDQGVKVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFQVANIGAEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLIALCQAIDLRHLEENLKNTIKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYVDDPCSATYPLMQKLRQVLVDHALANAESEKNLNTSIFQKIATFEDELKALLPKEVEGARIAYENDQCAIPNKIKECRSYPLYKFVREELGTKLLTGEKAISPGEECDKLFTAMCQGKIIDPIMECLGEWNGAPIPIC. 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05549 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Seca7g05549 713 Gene3D - 526 647 IPR023144 -
Seca7g05549 713 FunFam Phenylalanine ammonia-lyase 260 568 - -
Seca7g05549 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Seca7g05549 713 FunFam Phenylalanine ammonia-lyase 14 259 - -
Seca7g05549 713 NCBIfam phenylalanine ammonia-lyase 22 702 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca7g05549 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824
Seca7g05549 713 Gene3D - 15 259 IPR024083 -
Seca7g05549 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 -
Seca7g05549 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Seca7g05549 713 CDD PAL-HAL 58 523 IPR001106 -
Seca7g05549 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05549 Seca-Chr7 154250451 154254295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05549 22 713 Monolignol Biosynthesis Gene Families AT2G37040 84.971 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05549 K10775 - gmx:100803857 1308.12