Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05545 ATGTGGACTCTCTCTGAAGTGATGAAGTTAGTTGATGGGATATCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGTTTTTGTTTTCTTCTTCAAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGTAACCTTTTGAGAGCCAGTTCAGCACAGAAATTCAACAAGAAAGAGGCTGAGCAAAATGACGAGCTTGCTCTACGTCCGTTACCATCTAATGTGGTACGCCGTGTGTGTGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGCTCAAAGAAATCATGCGTTAGCCCAGTTGGTTCTTCTTCTGTGATTGCTAGTCAAAATAAAGGTTCTCCCGTAAGTCTTAGCAGAAGAGATGTACGTAGGAAGAAGAGTACTTAG 399 0.4336 MWTLSEVMKLVDGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKFNKKEAEQNDELALRPLPSNVVRRVCELAKIHPYPRQRGSKKSCVSPVGSSSVIASQNKGSPVSLSRRDVRRKKST. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05545 132 MobiDBLite consensus disorder prediction 92 132 - -
Seca7g05545 132 MobiDBLite consensus disorder prediction 99 120 - -
Seca7g05545 132 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Seca7g05545 132 CDD SANT_TRF 1 50 - -
Seca7g05545 132 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 108 - -
Seca7g05545 132 Gene3D - 1 90 - -
Seca7g05545 132 SMART sant 2 51 IPR001005 -
Seca7g05545 132 Pfam Myb-like DNA-binding domain 2 49 IPR001005 -
Seca7g05545 132 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Seca7g05545 132 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05545 Seca-Chr7 154202938 154204344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05545 1 49 Single Myb Histone (SMH) Gene Family AT1G15720 46.939 6.17e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g05545 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05545 - - aprc:113871152 212.231