Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05541 ATGCAGGCCATTGCCAATCAGGTTGCAATGAAGTGTTTTCCATTCTACTTTGGAGAGAAGAAGGATGATCTTAAGAACTTGCAATCAATATCAGGTCGGTCCAACAGTTCTACTTATGCTGGGGGTGAGGTGAAAAGAACTGGTTCTGAATTAAATTCTCTGGATGCCTCAGACAATAGCACAGACTCTCTCAGGAGAAATGCATTTCCTAATTTGTCTCAAAGACCCAGCAACCTCAGAGTATTTACTGTGTCTGAACTGAAATCAGCTACCAAGAATTTTAGTCGCTCTGTTATGCTTGGAGAGGGTGGGTTTGGATGTGTCTACAAAGGATCGATCAAGAGTGTAGATGATCCTTCCAGAAAAACTGAAGTTGCAGTTAAACAACTTGGTAGAAGAGGAATTCAGGCAAGGTTTTGCCCTCTATTGCAGGGGCATAAGGAATGGGTAACAGAAGTGAATGTTCTAGGTATTGTTGAGCATCCTAATCTTGTGAAACTAGTGGGCTACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCCAACAGAAGTGTGGAATATCATTTATCCCCACGATCAGAAACTTCTCTTCCATGGATTAGGAGATTGAAAATAGCCCAAGATGCAGCTCGTGGGTTAACATACCTGCATGAGGAAATGGAATTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGATGAGCATTGGAATGCAAAGCTGTCAGACTTCGGGTTAGCAAGATTGGGACCATCTGATGGATTAACTCATGTTTCAACAGCGGTTGTAGGAACAATGGGGTATGCAGCTCCTGAGTATATTCAAACTGGGCGTCTCACATCAAAGAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATTACTGGCAGGCGCCCTATAGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTGTTGGAATGGATAAGGCCATACCTTTCAGATGGGAAGAAATTTCAATTAATATTGGATCCAAGACTTGAGAGGAAACACCTCTTTAAGTCAGCCCAAAGACTTGCTATAATAGCTAACAGATGCTTGGTCAGAAACCCAAAGAGTCGCCCAAAGATGAGTGAAGTATTAGAAATGGTGAGTCGGATTGTGGAGTCTTCTGTGAGTTCTAATCAACAGCCACCCTTGAAGAGTCTATCCCCAGCAGAGGCTTCTCAGGACACTGAAGTAAAGAACAAGAAAAGGATCTTGGAGCCATATTATAATTGGTTTAGGGTGTGGAGACCAAAGCTTTTAAGAGCATGTTGA 1317 0.4229 MQAIANQVAMKCFPFYFGEKKDDLKNLQSISGRSNSSTYAGGEVKRTGSELNSLDASDNSTDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYKGSIKSVDDPSRKTEVAVKQLGRRGIQARFCPLLQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEYHLSPRSETSLPWIRRLKIAQDAARGLTYLHEEMEFQIIFRDFKSSNILLDEHWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKLLEWIRPYLSDGKKFQLILDPRLERKHLFKSAQRLAIIANRCLVRNPKSRPKMSEVLEMVSRIVESSVSSNQQPPLKSLSPAEASQDTEVKNKKRILEPYYNWFRVWRPKLLRAC. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05541 438 MobiDBLite consensus disorder prediction 50 71 - -
Seca7g05541 438 ProSitePatterns Protein kinases ATP-binding region signature. 100 128 IPR017441 GO:0005524
Seca7g05541 438 Gene3D Transferase(Phosphotransferase) domain 1 188 403 - -
Seca7g05541 438 MobiDBLite consensus disorder prediction 49 71 - -
Seca7g05541 438 PANTHER OS01G0588500 PROTEIN-RELATED 60 385 - -
Seca7g05541 438 Gene3D Phosphorylase Kinase; domain 1 67 187 - -
Seca7g05541 438 MobiDBLite consensus disorder prediction 391 409 - -
Seca7g05541 438 MobiDBLite consensus disorder prediction 391 411 - -
Seca7g05541 438 FunFam Serine/threonine-protein kinase BIK1 61 187 - -
Seca7g05541 438 FunFam Serine/threonine-protein kinase PCRK2 188 397 - -
Seca7g05541 438 CDD STKc_IRAK 100 386 - -
Seca7g05541 438 SUPERFAMILY Protein kinase-like (PK-like) 71 383 IPR011009 -
Seca7g05541 438 ProSiteProfiles Protein kinase domain profile. 94 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05541 438 Pfam Protein kinase domain 96 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05541 Seca-Chr7 154159576 154162518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05541 10 415 Glycoside Hydrolase AT3G07070 40.865 1.08e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca7g05541 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05541 - - gmx:100305438 764.607