Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05514 ATGGCGAACCAACCTGAATCTTCAGATTCCAAGGGAACAAAGCGGGACTACAGTACCGCGATCTTGGAACGCAAGAAGGCACCGAACCGGCTTGTAGTTGACGAAGCCATCAATGATGACAACTCCGTCGTTGCTCTTCACCCTGAAACCATGGAGAAGCTCCAGCTCTTTCGCGGGGACACCATTTTGATCAAGGGAAAGAAAAGGAAAGATACCATCTGTATTGCACTTGCTGATGACACTTGTGAGGAGCCAAAGATAAGAATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTTGGAGATGTTGTTTCTGTTCACCAGTGCCCAGATGTAAAATATGGAAAGCGAGTCCACATTCTTCCTGTGGATGACACTATTGAAGGGGTAACTGGGAATCTCTTTGATGCCTACTTAAAGCCTTATTTCCTGGAGGCATATCGTCCAGTAAGGAAGGGAGATTTCTTCCTTGTGAGAGGGGGGATGAGAAGTGTGGAATTCAAGGTTATTGAAACTGACCCTCCTGAGTATTGTGTTGTTGCTCCAGACACTGAGATCTTCTGTGAAGGAGAGCCTATTAAAAGGGAAGATGAGAATAGATTAGATGAAGTTGGTTATGATGATGTTGGTGGTGTTAGAAAGCAGATGGCACAGATTCGGGAACTGGTGGAACTGCCATTGAGGCATCCACAATTATTCAAGTCTATTGGTGTTAAGCCACCAAAGGGAATTCTGCTGTATGGACCCCCTGGGTCTGGTAAAACTTTAATTGCCAGGGCAGTTGCAAATGAAACCGGTGCCTTCTTTTTCTGCATCAATGGACCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCAGAGAAAAATGCACCCTCTATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGCGGGAGAAGACTCATGGTGAAGTTGAGAGGAGAATTGTTTCTCAGCTCTTGACCCTCATGGATGGGCTCAAATCCCGTGCACATGTAATTGTTATTGGAGCTACAAATCGTCCCAATAGTATTGACCCTGCTCTTCGGAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTACCAGATGAAGTTGGACGTCTTGAGGTTCTTCGCATCCATACAAAAAATATGAAGCTTGCGGAAGATGTTGATTTAGAAAGGATTTCTAAGGACACCCATGGATATGTTGGTGCTGATCTAGCTGCTTTGTGTACTGAGGCTGCACTTCAGTGCATCAGAGAGAAAATGGATGTGATTGACTTGGAAGATGAGTCCATTGATGCTGAGATACTGAACTCAATGGCAGTGACAAATGAGCATTTCCAGACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGGGAAACAGTGAGTATTCTAGCAGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCAGAAAAATTTGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTTTAGCAAAAGCTATTGCCAATGAATGTCAGGCGAACTTCATCAGTGTCAAGGGTCCTGAGCTACTCACAATGTGGTTTGGAGAGAGTGAGGCTAATGTGAGGGAAATTTTTGACAAAGCTCGTGGTTCAGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGAGAGGCAGTAGTGTAGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAATCAACTGCTTACAGAAATGGATGGAATGTCAGCAAAGAAAACCGTGTTTATCATTGGGGCCACCAATCGACCAGACATTATAGATCCTGCTCTTCTGCGACCAGGCCGTCTGGACCAGTTGATTTATATCCCCCTTCCTGATGAGGATTCTCGATACCAGATATTCAAAGCTTGCTTGAGAAAATCTCCCATCTCAAAAGATGTTGATCTTAGAGCTCTTGCCAAGTATACTCAAGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCTATAAGAGAGAACATTGAGAAGGATATTGAGAGAGAAAGGAGGAGAAGAGATAACCCTGAAGCTATGGAAGAGGATATTGAAGATGATGATGTAGCTGAAATCAAAGCAGCTCATTTTGAAGAATCAATGAAGTATGCACGAAGGAGTGTGAGTGATGCTGACATTCGCAAGTACCAGGCATTCGCCCAAACATTGCAGCAGTCAAGAGGGTTTGGATCAGAGTTCAGGTTTGCAGATACCAGCGCTGGTGGTACTGCTGCTGCTGCATCTGACCCATTTGCAAGTGCTGGTGGAGCTGATGAAGATGATCTTTATAGTTAG 2442 0.4451 MANQPESSDSKGTKRDYSTAILERKKAPNRLVVDEAINDDNSVVALHPETMEKLQLFRGDTILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFQTALGSSNPSALRETVSILAVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRYQIFKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMEEDIEDDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADTSAGGTAAAASDPFASAGGADEDDLYS. 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05514 813 SMART CDC48_N_2 30 113 IPR003338 -
Seca7g05514 813 Gene3D - 660 769 - -
Seca7g05514 813 SMART CDC48_2_2 130 196 IPR004201 -
Seca7g05514 813 FunFam Cell division control 48 113 209 - -
Seca7g05514 813 CDD RecA-like_CDC48_r2-like 494 654 - -
Seca7g05514 813 Gene3D - 376 470 - -
Seca7g05514 813 Pfam AAA+ lid domain 397 439 IPR041569 -
Seca7g05514 813 Pfam AAA+ lid domain 678 718 IPR041569 -
Seca7g05514 813 Gene3D - 7 112 - -
Seca7g05514 813 SMART AAA_5 241 377 IPR003593 GO:0016887
Seca7g05514 813 SMART AAA_5 519 658 IPR003593 GO:0016887
Seca7g05514 813 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Seca7g05514 813 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Seca7g05514 813 Pfam ATPase family associated with various cellular activities (AAA) 523 656 IPR003959 GO:0005524|GO:0016887
Seca7g05514 813 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Seca7g05514 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 770 IPR027417 -
Seca7g05514 813 ProSitePatterns AAA-protein family signature. 626 644 IPR003960 GO:0005524|GO:0016887
Seca7g05514 813 MobiDBLite consensus disorder prediction 792 813 - -
Seca7g05514 813 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Seca7g05514 813 CDD RecA-like_CDC48_r1-like 209 374 - -
Seca7g05514 813 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Seca7g05514 813 Gene3D - 113 209 - -
Seca7g05514 813 PANTHER AAA-FAMILY ATPASE 403 775 - -
Seca7g05514 813 SUPERFAMILY ADC-like 27 110 IPR009010 -
Seca7g05514 813 NCBIfam CDC48 family AAA ATPase 31 773 IPR005938 GO:0016787
Seca7g05514 813 Gene3D - 472 656 IPR027417 -
Seca7g05514 813 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Seca7g05514 813 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Seca7g05514 813 FunFam Transitional endoplasmic reticulum ATPase 468 656 - -
Seca7g05514 813 Gene3D - 210 374 IPR027417 -
Seca7g05514 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 471 IPR027417 -
Seca7g05514 813 FunFam Cell division control 48 376 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05514 Seca-Chr7 153960457 153964546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05514 447 715 Calmodulin-binding Proteins AT3G56690 47.584 5.90e-78 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05514 K13525 - gmx:100814141 1507.27