Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05490 ATGGGCAGGGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGACCTTGGAGTCCTGAAGAAGATGAAAAGCTAAAGGAGTACATAGAGAAACATGGGACTGGAGGGAACTGGATTGCCCTCCCACAGAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCCAACCTTAAGCATGGTGAGTTCTCTGAAGATGAAGATAGAGTAATCTGCAGTCTCTATGCTAGCATTGGAAGCAGGTTTCTTAATTTGGGATCTCATTGTGACAAGTGCAGGTGGTCAATAATAGCATCTCAGTTGCCTGGTAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATGAATCCTTTGAAGAAACCTCACCAAGTTACCCTTTTATCAGTCTTTCAAAATTCAACACCAACTTCATCCTCCTCATCAACTTCACCATTATCATTCAGGGACAACCACAACTCTTACTACCACCCTCATGTGTCTTTCACAGGCTCTGAGTCTATTTCATACTCCTCTAGTCTTTTGAGTGGCAATTCTTCTACTCCTGCTAATTCCAATTTTCAAGCACAAGAAAGTTTCTTGGGCCCTATTCAGAATTACCAAGTTAATAGTGGTTTTATGTTTGGGGGTGAAGCTAGTTGTAGCTCTTCTGATGGGAGCTGCAATAACCAGATGAGTCATCAGGTAAAAGAAGCAGAACTTGGATATGGTGGAGATGGAACTTTTGCAGACCAGATAGGTGGACTTAATTGCCTCTACAGTGGGATGGAAGATACCCAAAAGTTGATGCTCTCCAATGCTGGTAGGGTTAGTGGGTGGACAGTGGAACAAAGTAGATTATGGGGAGAAAATCCATTAAATTATGGTCTAGAAGAAATTAAACAGCTTATAAGCACCAATAGTTGTAACAACTTTTTGTTTGATGACAAGACAGAGGAAAGGATCATGTACTACTGA 1005 0.4109 MGRAPCCDKANVKKGPWSPEEDEKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRVICSLYASIGSRFLNLGSHCDKCRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGMNPLKKPHQVTLLSVFQNSTPTSSSSSTSPLSFRDNHNSYYHPHVSFTGSESISYSSSLLSGNSSTPANSNFQAQESFLGPIQNYQVNSGFMFGGEASCSSSDGSCNNQMSHQVKEAELGYGGDGTFADQIGGLNCLYSGMEDTQKLMLSNAGRVSGWTVEQSRLWGENPLNYGLEEIKQLISTNSCNNFLFDDKTEERIMYY. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05490 334 ProSiteProfiles Myb-like domain profile. 63 125 IPR001005 -
Seca7g05490 334 Pfam Myb-like DNA-binding domain 69 123 IPR001005 -
Seca7g05490 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca7g05490 334 Gene3D - 69 144 - -
Seca7g05490 334 SUPERFAMILY Homeodomain-like 11 121 IPR009057 -
Seca7g05490 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca7g05490 334 SMART sant 13 64 IPR001005 -
Seca7g05490 334 SMART sant 67 127 IPR001005 -
Seca7g05490 334 CDD SANT 16 62 IPR001005 -
Seca7g05490 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Seca7g05490 334 PANTHER OS09G0431300 PROTEIN 1 247 - -
Seca7g05490 334 CDD SANT 70 125 IPR001005 -
Seca7g05490 334 Gene3D - 7 68 - -
Seca7g05490 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 129 IPR017930 -
Seca7g05490 334 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05490 Seca-Chr7 153673059 153675139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05490 1 131 MYB Transcription Factor Family AT5G57620 80.153 1.44e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g05490 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05490 K09422 - gmx:100820139 428.713