Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05484 ATGGAGCACAATGTATGTCAATCACTTGAAGTTAATGAGCATAAAGATATTTTTCTTGGCCAAGTTGTTTATAACAAAGATGAAGCTTATGCCTTGTACCAAGAACATGCATTCAAAATGGGTTTTAGTGTGAGAAAAGGGAGGGAGTTGTATTATGATATTGAAAAAAAGAACACTCGTTTGAAGGATTATTATTGCTCTAAACAAGGGTTTAAGAACAATGAACTTGTAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGAACAGATTGCAAAGCTATGGTGAGATTTAATGTGAGTAAGGATGGAGTATGGAAAATTACAAAGTTAGAACTGAATCATAACCATGACTTTGTGCCACAAGAGCAAAGACATTTGCTACGTTCTATGAGAGGCGTATCAAATGCCAAAGGAGGCCTCATTAATTCCATGGTGAATGCAGGTATGAAAGTTACAAATATTTGGAGTTATTTGGGGGAAGAGGTTGGTGGATTTGATAATCTTGGTATTACAATGAAAGATATGCATAATTATGTCTACTCTGAAAAGTTGAAATTAATTGATGCTGGTGATGCTCAGGCTTTAGTGAATCACTTGCAAAGTAGACAGGCACAAGATGCAATGTTCTACTATAGTGTGCAATTAGACCAGGAATCACGTTTGACTAATGTATTTTGGAGAGATGGTAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGATTTTTGACACCACTTACCGTACCAATAAATATAACTTGATTTGTGCCCCCTTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTATGGTTGTGCTTTGTTATCTGATGAAACTGCAATTTCTTTCACTTGGTTGTTCAAAGTGTTTTTGGAAAGTATGGGAAACCAACAACCAAAAACCATCTTTACAGATCAAGATGCAGCTATGGCAAAAGCAATTGGAGAGGTAATGCCAAACACATGTCATCGATTATGCTTGTGGCATATAGCAAAAAATGCTCCTTCTCATTTGGGTTCTCTAAATTCTGACAATAAGTTTCAAAGCTTATTCAATAAATGCATGAAAGGTTGTGATTCAGAAGAAGAATTTCAAAGCACTTGGGATGAAATGATAAATGAGTATAAACTTCATGATCATCAATGGTTGAGCAATATGTATAAAATTCGTCACAAGTGGAGCACTGCTTTTAGCAAGAATATATTTTCTGCAGGTATCAAGTCTTCTCAAAGGAGCGAAAGTACAAACAGTGTGTTGGGTGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCTTAGTGGCATTTGAGAAGATGGTAAAAAAGTGGCGCTACTTAGAAGTTGAGAAAGAATTCAAAAATAGTCAAAGTGCACCTCCTCGTATTATAAATATTAGTGAGACTCTACGACATGCATCTTTGATATATACTCATAAGATATTTAAACTATTTTTGAATGAATATCTTGAAGGGACAGGTGGAAGCACTTCTATGGAGATTGGTGGGTGTAATAATGTGTCATATCATGAAGTTATTTTTAACCATATGCCTAATAAGAAGTATCAGGTAACATTTGACTCTTCCACTATGATGATTAATTGCAGCTGTCACAAGTTTGATTCTATGGGTATTCTGTGTAGTCATGCCTTGCGAATTTACAACATTAAAGGTATTTTAAAAATACCCGACCAATACTTCTTAAAAAGATGGTCAAAAAGTGCAAGGTCCATGATTTATGAGCACATAAATAGGGGTTCGAAAGAAGATTCTAGCTCTAATGTCATTAACTCAATGACCAATGGTGATGATGCTGGTATTCTTTATCGCAATGCTATTATGAAGTCATTTTATAATCTGGTTTTGGAAACTCAAGAACACAAAGAAACTCAGCAAATTATGTGGAAATTGCTTAATATTGGAGTTGAGCAAGTGCAACAATGTATTGGTAAGCTCAATTTAAATTCAAATGCAGAAACCATTGAGAACAAATTCACTCAAATTGAGGATAATGAATGGGCTGCAATTTTTAATCCTCCTCTTGCAAAGACCAAAGGAATGTCTACTGCTCGCAAGAAGGGGCATTTTGAGAAAAGGAAGCGATCAACCACAAAAACAAAGCAAAATAAAGAGAAACAAAAAGAAGATGGGTTTTGTGCTGTTAATTCTTCTACAATTGAGCTAACTAATGTTTTGAATTGCATGGATAAGTCAGCAATCTTGTGA 2229 0.3513 MEHNVCQSLEVNEHKDIFLGQVVYNKDEAYALYQEHAFKMGFSVRKGRELYYDIEKKNTRLKDYYCSKQGFKNNELVGEVAYERADSRTDCKAMVRFNVSKDGVWKITKLELNHNHDFVPQEQRHLLRSMRGVSNAKGGLINSMVNAGMKVTNIWSYLGEEVGGFDNLGITMKDMHNYVYSEKLKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVIFDTTYRTNKYNLICAPFVGVNHHWQNVMYGCALLSDETAISFTWLFKVFLESMGNQQPKTIFTDQDAAMAKAIGEVMPNTCHRLCLWHIAKNAPSHLGSLNSDNKFQSLFNKCMKGCDSEEEFQSTWDEMINEYKLHDHQWLSNMYKIRHKWSTAFSKNIFSAGIKSSQRSESTNSVLGEIAGKTTSLTQFLVAFEKMVKKWRYLEVEKEFKNSQSAPPRIINISETLRHASLIYTHKIFKLFLNEYLEGTGGSTSMEIGGCNNVSYHEVIFNHMPNKKYQVTFDSSTMMINCSCHKFDSMGILCSHALRIYNIKGILKIPDQYFLKRWSKSARSMIYEHINRGSKEDSSSNVINSMTNGDDAGILYRNAIMKSFYNLVLETQEHKETQQIMWKLLNIGVEQVQQCIGKLNLNSNAETIENKFTQIEDNEWAAIFNPPLAKTKGMSTARKKGHFEKRKRSTTKTKQNKEKQKEDGFCAVNSSTIELTNVLNCMDKSAIL. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05484 742 Coils Coil 652 672 - -
Seca7g05484 742 MobiDBLite consensus disorder prediction 689 708 - -
Seca7g05484 742 SMART 26again6 534 561 IPR006564 GO:0008270
Seca7g05484 742 ProSiteProfiles Zinc finger SWIM-type profile. 523 559 IPR007527 GO:0008270
Seca7g05484 742 Pfam MULE transposase domain 241 335 IPR018289 -
Seca7g05484 742 MobiDBLite consensus disorder prediction 686 716 - -
Seca7g05484 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 647 IPR031052 GO:0006355
Seca7g05484 742 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Seca7g05484 742 Pfam SWIM zinc finger 523 554 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05484 Seca-Chr7 153601722 153604546 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g05484 MULE 1.1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05484 - - tpra:123905334 1161.75