Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05477 ATGACATATAAATATCAAGCAACCATGCAAGGAGAACATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAGCAATTGACCAGCTTTGTGACTCGTCTTGGGGAACGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGCCTTAGGAGAAGTGGTAAAAGCTGCAGGTTAAGGTGGATGAACTACCTTCGTCCAAATCTCAAGCATGGACCTTTCAGTGTTGAAGAAGAGCAACTTATTGTTCAGCTTCAGCAACAATGGGGTAACAAGTGGGCGAAGATTGCTCGTAGGCTTCCAGGAAGAACTGACAATGAAATCAAGAACTACTGGAGAACTCATTTAAGAAAAAGAGTACAAGCTCAACAAGAAGGTGCACAAGGTTTCAACCAGAAAAGCATTGATATGGTTTCCAAGGATTGCAACCATGTAAACGTTTACTGTCAAGAAAATGAGTGGGAGACTAAGGATAGCTCCTCCATTGACACTTTTCCCTTATCAGATTGGGAAATGAGAAGCTCCCCTTATGAAGCTAGGATATTTGATTGGATAGCAGAATTGCAAAATGGATATGATGAGAAAGAACTAGAACAAGATTGCAATAGCACAGGAACGTACGAATATAATCCTCATGAATCTGCAGAGAGTTATGATGCATGGGATTATTCAGGTTTCCTGTGGGACATGAATTGA 690 0.4188 MTYKYQATMQGEHLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLRRSGKSCRLRWMNYLRPNLKHGPFSVEEEQLIVQLQQQWGNKWAKIARRLPGRTDNEIKNYWRTHLRKRVQAQQEGAQGFNQKSIDMVSKDCNHVNVYCQENEWETKDSSSIDTFPLSDWEMRSSPYEARIFDWIAELQNGYDEKELEQDCNSTGTYEYNPHESAESYDAWDYSGFLWDMN. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05477 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Seca7g05477 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Seca7g05477 229 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Seca7g05477 229 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Seca7g05477 229 Gene3D - 16 68 - -
Seca7g05477 229 FunFam Myb transcription factor 16 68 - -
Seca7g05477 229 SMART sant 68 116 IPR001005 -
Seca7g05477 229 SMART sant 15 65 IPR001005 -
Seca7g05477 229 Gene3D - 70 138 - -
Seca7g05477 229 CDD SANT 71 114 IPR001005 -
Seca7g05477 229 CDD SANT 18 63 IPR001005 -
Seca7g05477 229 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Seca7g05477 229 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Seca7g05477 229 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Seca7g05477 229 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05477 Seca-Chr7 153447315 153448602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05477 12 122 MYB Transcription Factor Family AT5G59780 60.360 3.82e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g05477 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05477 K09422 - gmx:100783472 364.385