Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05476 ATGCTCCAAACAACCTGCATTTTACTCATCTCTGTTCTGGCTTCGTTTTTACCTCATGGCAGAGCAATGCTGAACCTCACTCTGCCAGGCCAACATCCAGACCCCGAAGCTATTGCCCGAGAAGTTCACAGGAAAGTTAATGCTTCACTTACAAGGAGGGAAATGCTAGCAGTATCAGAGAAAGATGTGTCATCGTGTCTAACTGGAAACCCCATTGATGACTGTTGGAAATGCGACCCAGATTGGGCTAACAACAGACAAAGGCTAGCTGATTGTGCAATTGGGTTCGGGCAAAACGCGAAGGGAGGCAAAGGTGGGCAATTTTACATAGTCACGGACTCCTCAGACGATGACGCTGTGAACCCAAAACCTGGGACACTTAGATATGCTGTGATACAGAATGAGCCACTATGGATTGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAACTCATTTTTAACAGCTATAAAACCATTGATGGGCGTGGCGCTGATGTGCACATTGTGGGTGGAGGCTGTATCACACTTCAGTATATAAGCAATGTCATCATACACAACATTCACATCCACCATTGTCATCCCTCCGGTAACGCTAACGTGCGGTCGAGTCCAGAGCACTACGGTTTCCGAACAGAATCAGACGGTGACGGAATCTCGATATTCGGATCAAGGGACATATGGATCGACCACTGCACACTATCACGTTGCAAGGACGGTTTGATAGACGCAGTGATGGGTTCAACGGCGATAACGATTTCCAACAACCACTTCTCACACCACAACGAGGTGATGCTTTTAGGGCACAGCGACCACTACACGCCAGACTCAGCTATGCAGGTGACAATCGCTTTCAACCACTTCGGCGAGAATCTCGTGCAGAGAATGCCGCGGTGCAGGCTAGGGTACATCCACGTGGTGAACAACGACTTCACGATGTGGGAGATGTACGCTATTGGGGGAAGTGGGGGGCCCACAATTAACAGCCAGGGGAACCGTTACACTGCACCAGAGGATCGTTATGCGAAGGAGGTGACGAAGAGGTTGGATACTGGAGAAGGAGAGTGGAGTTCGTGGAATTGGAGGTCGGAAGGGGATGTGATGGTGAATGGAGCTTTCTTTGTGGCTTCGGGTGGAGATAGTGAGGGAAAGTATGAGAAGGCTTACAGTGTTGACCCTAAATCTGCTGATCGGATTTCATTCCTCACCATGGCCGCCGGTGTTCTCGGTGTTGCAAGGGACAATAATCTGGGTATGTGGACTAGAGGACCCAATGATGGTGGTACTTATTTTTCAGATTTCGGCCCAGATTACACAGACGATATGTCCCAGACTACAATGCTGATGCCACCTTCACTTACTTTCACTCTTGTCTCTGTTTTTCTTGCATTCTTGTGCTTGTTATTTCATACAAGTACAACCTTAGCTATAATTCTATAA 1443 0.4802 MLQTTCILLISVLASFLPHGRAMLNLTLPGQHPDPEAIAREVHRKVNASLTRREMLAVSEKDVSSCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGFRTESDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYTPDSAMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTMWEMYAIGGSGGPTINSQGNRYTAPEDRYAKEVTKRLDTGEGEWSSWNWRSEGDVMVNGAFFVASGGDSEGKYEKAYSVDPKSADRISFLTMAAGVLGVARDNNLGMWTRGPNDGGTYFSDFGPDYTDDMSQTTMLMPPSLTFTLVSVFLAFLCLLFHTSTTLAIIL. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05476 480 Pfam Pectate lyase 153 321 IPR002022 -
Seca7g05476 480 PANTHER PECTATE LYASE 18-RELATED 31 413 IPR045032 GO:0030570
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Seca7g05476 480 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Seca7g05476 480 Gene3D - 69 411 IPR012334 -
Seca7g05476 480 FunFam Pectate lyase 69 411 - -
Seca7g05476 480 SMART amb_all 144 341 IPR002022 -
Seca7g05476 480 SUPERFAMILY Pectin lyase-like 70 398 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05476 Seca-Chr7 153441149 153445488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05476 1 479 Polysaccharide Lyase AT3G53190 70.697 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05476 K01728 - gmx:100815062 846.269