Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05473 ATGCGGAACAGGAACAGCGACACCGACACCCCCCTCAGTGGGCCTAGGCCCGTTTTCTTTCAGAATCCTGAGAATGAGAGCAACAATCAGAACATAAAGGATACCCTATGGAACATCGCGAAGGCCGCACTTGCCGAGTTAGTATCCACATTCATCTTCGTCTTTGCCGGCTCCGGCTCCCTCATCGCCATCAACAAGTCCACCGGCGACACCCCCGCCGGCCTCATCGCCTCCGCCCTCGCTCACGCTTTCGCCCTCTCCGCCGCCGTATGCGTCCCCGGCGTATTCTTCAACAGCCCGTACACCTCATGCGGCCACATCAACCCCGCCGTCACCTTGGGCGCCTTCATCGGCGGCAACATCCACGTCATTCTCCTCATCGTCTACTGGATCGCCCAACTCCTCGGCTCCATCGTCGCCTGCTTGCTCCTCATGCTCGTCACAGGCCGACAGAGTGTGCCAACTTATGGACTTTCGGAAGGAGTTGGAACTGAGAACGCGGTGGCGTTAGAGGCGGTGATGACGTTCGGGTTGGTGTTTACTGTGTATGCCACTATGTTTGACCCCAACGCCAAGTTCGAAACGGAGTATGTTCGTCGTCATCCCGTTGACCCCAAGGAGAAGACCAAGAAGAAGCAGAAGAAGGATGGTTTGGACATGATCGCACCCATTGCCATCGGGCTGATCGTTGGAGCGAATATTTTGGCGGGCGGGGCTTTTGATGGGGCACCCATGAACCCGGCTTTGGCGTTTGGGCCTGCTCTGGTGAACTGGAAATGGGCCAACCATTGGGTCTATTGGGTTGGGCCTCTCATTGGTGGTGGGCTTGCTGGATTTACTTATGAGCTGGCCTTTATTAATAATTAG 867 0.5617 MRNRNSDTDTPLSGPRPVFFQNPENESNNQNIKDTLWNIAKAALAELVSTFIFVFAGSGSLIAINKSTGDTPAGLIASALAHAFALSAAVCVPGVFFNSPYTSCGHINPAVTLGAFIGGNIHVILLIVYWIAQLLGSIVACLLLMLVTGRQSVPTYGLSEGVGTENAVALEAVMTFGLVFTVYATMFDPNAKFETEYVRRHPVDPKEKTKKKQKKDGLDMIAPIAIGLIVGANILAGGAFDGAPMNPALAFGPALVNWKWANHWVYWVGPLIGGGLAGFTYELAFINN. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05473 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Seca7g05473 288 SUPERFAMILY Aquaporin-like 35 286 IPR023271 -
Seca7g05473 288 Gene3D Glycerol uptake facilitator protein. 29 288 IPR023271 -
Seca7g05473 288 CDD MIP 41 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 Pfam Major intrinsic protein 37 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 Pfam Major intrinsic protein 212 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 MobiDBLite consensus disorder prediction 1 27 - -
Seca7g05473 288 PANTHER AQUAPORIN-8 38 287 IPR034294 -
Seca7g05473 288 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05473 288 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05473 Seca-Chr7 153392173 153393628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05473 41 288 Major Intrinsic Protein MIP AT2G36830 58.167 1.36e-87 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05473 K09873 - gmx:100820403 272.322