Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05470 ATGGCCAATTGTCTCATTCTCTTGGCTCAAGGCCATCATGCGCCACCGGATCACAAGTCATCAGGCCTATGCCTTTATGAGTGCAAGACTTGCAACCGATGCTTCCCTTCATTCCAAGCGCTTGGTGGACATAGAGCGAGTCACAAGAAACCTAAGGCTAACGGTAATTGTACGGAAGAAAAGAAAGCAGTTACTGCTTTTGTGAATGATGATCATTATGGCCCCACCATAAATACTATTCTCTCGTTGCAACTAACAAACAGGGGTTCGTATACTGCTACTACTACTGCTGCAATAACAAAATCTAAAGTTCACGAGTGTTCTATTTGTGGTGCTGAATTCTCATCTGGACAAGCCTTGGGAGGCCATATGAGGAGGCACAGAACTCATGTGACCACGTCCACAACGACGTCGTCTATGAGCGGTGGAAGCCCTGAATCACAAGAAGCCAAGAAACCGAGAAACGTTTTGAAATTGGACTTGAATTTGCCAGCACCAGAGGATGATCACAAATTTTCGTTTCAGCCTGGGCCCAGAGAAAACGTTATTGTCTTCTCTACATCTTCTTTGGTGGATTGTCATTACTAA 588 0.449 MANCLILLAQGHHAPPDHKSSGLCLYECKTCNRCFPSFQALGGHRASHKKPKANGNCTEEKKAVTAFVNDDHYGPTINTILSLQLTNRGSYTATTTAAITKSKVHECSICGAEFSSGQALGGHMRRHRTHVTTSTTTSSMSGGSPESQEAKKPRNVLKLDLNLPAPEDDHKFSFQPGPRENVIVFSTSSLVDCHY. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05470 195 MobiDBLite consensus disorder prediction 131 148 - -
Seca7g05470 195 SMART c2h2final6 26 48 IPR013087 -
Seca7g05470 195 SMART c2h2final6 105 127 IPR013087 -
Seca7g05470 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Seca7g05470 195 PANTHER ZINC FINGER PROTEIN ZAT5 1 172 - -
Seca7g05470 195 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Seca7g05470 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Seca7g05470 195 Pfam C2H2-type zinc finger 26 51 - -
Seca7g05470 195 Pfam C2H2-type zinc finger 104 128 - -
Seca7g05470 195 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Seca7g05470 195 SUPERFAMILY beta-beta-alpha zinc fingers 26 127 IPR036236 -
Seca7g05470 195 Gene3D Classic Zinc Finger 24 127 - -
Seca7g05470 195 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05470 Seca-Chr7 153370078 153370665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05470 1 195 C2H2 Transcription Factor Family AT5G03510 43.913 2.95e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05470 zf-C2H2_6 6.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05470 - - tpra:123884313 217.624