Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05469 ATGGCGGTTCCGGGGAGGCGCAATGGCATGAACGAGGAGGACGACGAAGAAGAAGCCAACGCCCTTTTTGAAGAAGAAGGTCTCATCGAATTTGAAGAAGAAATCGATACGCCTCCTCATCTCCGTGCTCTCTCCCGCGCCGCTCAGCGTGGCGACGTCCACGCCCTCCGCCTCGCTCTAGATAACTTGAATGGTAGTATCGATGAGCCAGTGGAGGATGGGGATACAGCTCTTCATTTGACCTGTTTATATGGCCATTTGGAATGTGTCCAGCTCCTGATAGAAAGAGGAGCAAACTTGGAGGCTAAGGATGAGGAGGGCGGAATTCCTTTACATGATGCTTGTGCAGGAGGTTTTACAGAGATTGTCCAGCTGCTACTCAACAGTGCTAACAACACAGAGCGTATAAAAAGGATGCTAGAATCAGTTGATTCTGAGGGTGATACTCCTCTTCACCATGCTGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTGTAATGGAGCCTCGACCACGAAGACAAACTTATATGGAAAGATCCCGGCGGAGTTACCTGATCATGACACAGATGCTAGGAGGCTGCTCCAGGCTGTCTCTAACGGCATGACAAGCTGA 621 0.4992 MAVPGRRNGMNEEDDEEEANALFEEEGLIEFEEEIDTPPHLRALSRAAQRGDVHALRLALDNLNGSIDEPVEDGDTALHLTCLYGHLECVQLLIERGANLEAKDEEGGIPLHDACAGGFTEIVQLLLNSANNTERIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLCNGASTTKTNLYGKIPAELPDHDTDARRLLQAVSNGMTS. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05469 206 Gene3D - 7 138 IPR036770 -
Seca7g05469 206 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Seca7g05469 206 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Seca7g05469 206 Gene3D - 139 205 IPR036770 -
Seca7g05469 206 ProSiteProfiles Ankyrin repeat region circular profile. 146 172 - -
Seca7g05469 206 Pfam Ankyrin repeats (3 copies) 41 104 IPR002110 GO:0005515
Seca7g05469 206 Pfam Ankyrin repeats (3 copies) 107 176 IPR002110 GO:0005515
Seca7g05469 206 FunFam BRCA1-associated RING domain protein 1 38 205 - -
Seca7g05469 206 SMART ANK_2a 39 69 IPR002110 GO:0005515
Seca7g05469 206 SMART ANK_2a 146 175 IPR002110 GO:0005515
Seca7g05469 206 SMART ANK_2a 73 102 IPR002110 GO:0005515
Seca7g05469 206 SMART ANK_2a 106 135 IPR002110 GO:0005515
Seca7g05469 206 ProSiteProfiles Ankyrin repeat profile. 146 178 IPR002110 GO:0005515
Seca7g05469 206 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Seca7g05469 206 PANTHER SOWAH (DROSOPHILA) HOMOLOG 34 198 - -
Seca7g05469 206 SUPERFAMILY Ankyrin repeat 33 185 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05469 Seca-Chr7 153358727 153361163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05469 43 189 Ion Channels AT2G25600 31.579 2.14e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05469 - - gmx:100527544 311.997