Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05400 ATGGACTCCTCCACGCGAGAACCTCAAACGGCAACTGCGTTTCATGATTCCGATAATGACAGCTGCAAGCGGAGAGGGGAAGGGAAGGTGGTGAACGGCTACATCGTTTATACTCGACGGAAGAGGAACCTCCATTCCGAGAATGAGAAAGCCAAGAGGCTCAAGACCTGCGACAATGCGGGAGTTAAAGTGGAAAGCCGAGTGTTAGTCGAGGAAGCTGCGGTGCTGAACGACGCCGTTTTCGGGAATTTCAAGCGGCATCGGCGATCGGCGTTGAAGAAGCCGAAGGTTGAGTCAGAAGATGCTGCTGCTGATAAGAGTGACTTGGAATTGAAGATTCCCAACAAGATCATCATGGTCAACAAGAAACCAATGACCGTGAAGGAGCTTTTCGATACTGGTTTGCTCGATGGGATTCCAGTTGTTTACGTGGGTTGCAAGAAGGCTTCAACTTCGGGATTGCGGGGTGTAATTACAGATGGGGGGATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGAGTTATTCCACCTTCCCAATTCGAGATTCATGCTTGCAATACATATAAGAGGGCAGCGCAGTATATTTGCTTTGAAAACGGGAAGAGCCTTCTTGAACTATTAGGAGCATGCAGAGCAGCTCCCCTAAGTACTTTGGAGGCGACCATTCAAAATTTTGTTTGTTCGCCACCTGAAGAAAAATATTTTACTTGCAAAAGTTGCAAAGGGTGTTTTCCTTCTTCAACTGTTGAAAGAGTTGGGCTTATATGCCATTCTTGCATGGAAGCAAGGAAATCTGAAGGCAGTTCTATTCATGCAGTTGGCAAAAGAATCAGGTCCCCTCGACCCATATTGTTCTCTAGCCCATCTTGTACTTCTGAACTGTGCATCTCTTCACAAACTAAAAGACGCTGGAAGATGAAAACAAAGTCATCAAAACGGGTTAGCTGCTCAAATTCTACCAGGAGTGCTTCTGTGCCTATTGTTTTCCGAAAGAAAAGTTTGTGCAGCATGGAGAAGAAGCCATCGAAACTGTCAGCAAAATTGAAGACCGCTCCCATTACTTCTAATTCAAAGTGTATATCTCCAAAAAATAAGAGTCAGTGGAGGATCACTAAAAAGCATCAGCGGTTGCATAAATTAATTTTTGAAGAAGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGTGGAAAGAAATTGCTTGAGGGTGTCAAAAGGCGCTCTGGAATTTTTTGTTGGTGCTGCAACACTTTGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGGTGGGCTTCTCGCAGGAAACCTTATGCATACATTTACACGTCGAATGGGGTGTCTCTCCATGAGTTAGCAATATTTCTCTCAAAAGATCGTAAATACACTGCAAAGTATAATGATGATGCATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGAGTGGTACTGTCAAATTTGTCAAAACATGTTCCTTGGAGAAAGATCTGTGACACACAGTGCTGATGCTTTAGCAGCTGGAAGGGTTGAAGGAGTTGATCCCATTGAGCAAATTGCCAAGAGATGCATTCGCATAGTGAAGGACGTTCATGCTGAGATTGGTGGATGTGCTTTATGCAGTGGTTCTGACTTCAGCCAATCAGGATTTGGTCCTCGCACAATAATAATTTGTGATCAGTGTGAAAAGGAATATCATGTCGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAGTTGCCGGAAGGGAATTGGTTCTGTTGCAATGATTGCACAAGAATACATTCTATTTTGGAGAAAATCCTGGTTAAGGTGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAGCAAGAGGAAAGGCTTTTAGAGCCCAATAATGAGATTGATGTAAGATGGAGACTTCTTAATGGTAAAGTTGCTTCTCCTGAAACTAGGCCATTGCTTCTGGAGGCCGTGTCAATGTTTCATGTAAGTTCTGCCTGTGCTTATGAATTGCTTCATCATTATCATCATCATATCTTCTTTTCCTTGGGTGGTTGA 2127 0.4386 MDSSTREPQTATAFHDSDNDSCKRRGEGKVVNGYIVYTRRKRNLHSENEKAKRLKTCDNAGVKVESRVLVEEAAVLNDAVFGNFKRHRRSALKKPKVESEDAAADKSDLELKIPNKIIMVNKKPMTVKELFDTGLLDGIPVVYVGCKKASTSGLRGVITDGGILCSCCLCNGRRVIPPSQFEIHACNTYKRAAQYICFENGKSLLELLGACRAAPLSTLEATIQNFVCSPPEEKYFTCKSCKGCFPSSTVERVGLICHSCMEARKSEGSSIHAVGKRIRSPRPILFSSPSCTSELCISSQTKRRWKMKTKSSKRVSCSNSTRSASVPIVFRKKSLCSMEKKPSKLSAKLKTAPITSNSKCISPKNKSQWRITKKHQRLHKLIFEEDGLPDGAEVAYYARGKKLLEGVKRRSGIFCWCCNTLISPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDRKYTAKYNDDACVVCWDGGNLLLCDGCPRAFHKECASISSIPRGEWYCQICQNMFLGERSVTHSADALAAGRVEGVDPIEQIAKRCIRIVKDVHAEIGGCALCSGSDFSQSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCNDCTRIHSILEKILVKVAERLPESLLDVIKKKQEERLLEPNNEIDVRWRLLNGKVASPETRPLLLEAVSMFHVSSACAYELLHHYHHHIFFSLGG. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05400 708 SUPERFAMILY FYVE/PHD zinc finger 460 515 IPR011011 -
Seca7g05400 708 SMART PHD_3 472 513 IPR001965 -
Seca7g05400 708 SMART PHD_3 560 617 IPR001965 -
Seca7g05400 708 Pfam PHD-finger 473 514 IPR019787 -
Seca7g05400 708 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 459 536 - -
Seca7g05400 708 Pfam Tify domain binding domain 156 208 IPR032308 -
Seca7g05400 708 Pfam Tify domain binding domain 406 456 IPR032308 -
Seca7g05400 708 SUPERFAMILY FYVE/PHD zinc finger 551 618 IPR011011 -
Seca7g05400 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 557 IPR013083 -
Seca7g05400 708 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 557 619 - -
Seca7g05400 708 MobiDBLite consensus disorder prediction 1 26 - -
Seca7g05400 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 619 IPR013083 -
Seca7g05400 708 MobiDBLite consensus disorder prediction 1 16 - -
Seca7g05400 708 ProSiteProfiles Zinc finger PHD-type profile. 470 515 IPR019787 -
Seca7g05400 708 PANTHER AUTOIMMUNE REGULATOR 60 687 - -
Seca7g05400 708 ProSitePatterns Zinc finger PHD-type signature. 473 512 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05400 Seca-Chr7 152590822 152597223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05400 105 685 PHD Transcription Factor Family AT2G36720 49.340 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g05400 TDBD 6.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05400 - - gmx:100798276 963.755