Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05372 ATGGTTCTCAAGACCGAACTTTGCCGTTTCAGTGGGGCGAAAATCTACCCTGGGAAAGGCATCAGATTTATTCGTAGTGATTCTCAGGTCTTCCTGTTTGCCAACTCAAAATGCAAAAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTATAGGAAGCAACACAAGAAGGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGCCGAACTACCAAAAGGCCTTACTCTAGGTCCATTGTTGGTGCTACTTTGGAAGTTATTCAGAAAAGAAGAAGTGAGAAGCCAGAGGTTCGAGATGCTGCTAGAGAAGCTGCTCTTCGTGAAATTAAGGAGAGGGTCAAGAAAACAAAGGATGAGAAAAGAGCTAAGAAGGCAGAAACTCAGGCTAAGGTACAAAAATCACAAGGCAAAGGCGGTGTTGGCAAGGTGGCTGCACCCAAAGGTCCTAAGCTTGGCGGTGGAGGCGGGAAGCGCTGA 495 0.4707 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKRPYSRSIVGATLEVIQKRRSEKPEVRDAAREAALREIKERVKKTKDEKRAKKAETQAKVQKSQGKGGVGKVAAPKGPKLGGGGGKR. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05372 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Seca7g05372 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Seca7g05372 164 MobiDBLite consensus disorder prediction 117 136 - -
Seca7g05372 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Seca7g05372 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 142 IPR000988 -
Seca7g05372 164 FunFam 60S ribosomal protein L24 3 64 - -
Seca7g05372 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Seca7g05372 164 MobiDBLite consensus disorder prediction 117 164 - -
Seca7g05372 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Seca7g05372 164 Coils Coil 112 136 - -
Seca7g05372 164 Gene3D - 69 139 - -
Seca7g05372 164 SMART 4TRASH 8 46 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05372 Seca-Chr7 152292231 152294448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05372 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 83.439 6.19e-86 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05372 K02896 - cpap:110822896 254.218